Glyma06g12930 - SoyBase

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Report for Sequence Feature Glyma06g12930

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10070682
stop:	10076012
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21350	AT	Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein \| chr1:7477376-7479012 REVERSE LENGTH=252	SoyBase	E_val: 5.00E-121	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016209	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antioxidant activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
PF00578	PFAM	AhpC/TSA family	JGI		ISS
UniRef100_I1KAL3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAL3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LPL8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G21350 protein n=2 Tax=Arabidopsis thaliana RepID=Q9LPL8_ARATH	SoyBase	E_val: 2.00E-118	ISS

Expression Patterns of Glyma06g12930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12930

Paralog	Evidence	Comments
Glyma04g41870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g124100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g12930

Limit To All Plant Sequences

>Glyma06g12930.2   sequence type=transcript   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAGTGTGGAAAAACGAAGACCAGAAAAGAAACAGAGTGATTGAAGAAGAAGATGATAATATTGATGATGGAGAATTGAGGTTGGAGTTGGAGTGAGTAACCCAGCACAGCAATGGCATTGAGACTGAGACTCAAAGTGTCTTCAATTGGGTCACCTTTTCTGCAGTTAGGTTCTTCTGCAAGTGCAGCATGCTCTGTTTCCAAACTTGGTTTTCATCCACCACGCTTGCAACTCAACAAAAATTCACACCCAATAAGGCTTTTTGTTCGGGCTGCTAGAATTGAGTCCAAAGGTGTTACCTTGGGTTTCAGGACCCCACAATTTCAGCTTCCGGAGCCCCTTACCGGGACGACCTGGACATTGGATGATTTTGAAGCTTATCCAGCTCTACTGGTTATGTTTATATGCAATCACTGTCCATTTGTTAAGCACCTGAAAAAAGACATTGTAAAGCTTACAAAGTTCTATATGGAGAAAGGACTTGCCGTCATTGCCATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGTCCAGAATTCATGGCAGAAGATGCTAAACTGTTTGGTTATCCTTTCCCATACCTATATGATGAGTCACAGGATGTTGCACAACATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTCAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTATCATGGTCAATTTGATGATTCACGCCCAAGTAATAATGTACCGGTCACTGGAAGACTTGAGCTTGGCAATAGATCGTGTTCTTAGTGGCCAACCTGTACCATCAGAGCAAAAACCTAGTGTTGGATGCAGCATAAAGTGGCACCCAGGGAAGAAGTTTTGATTGATAAACTGTAATTATTTTGTTCATTAAAAGTTTCTTTTTCAGGTTTGCTATGCTTTATGTAATGTCACTAACCATATTAGACTGTTACACCTTATTTTCTTTCCATTCAGTGTGACTTGTAAGGAAATGGTGTCATTTGTGGTTCTTATAGTTACTGTGTATTTCACATAAGTAATAAGTTGCATACTATAGTGCGCGCTAATGAATACATTTTAATTGTAATAACAAGGGAATTTGTTTTGCAATCCTCCTAGAAATACAACCATATTTATTATA

Coding sequences of Glyma06g12930

Limit To All Plant Sequences

>Glyma06g12930.1   sequence type=CDS   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGAGACTGAGACTCAAAGTGTCTTCAATTGGGTCACCTTTTCTGCAGTTAGGTTCTTCTGCAAGTGCAGCATGCTCTGTTTCCAAACTTGGTTTTCATCCACCACGCTTGCAACTCAACAAAAATTCACACCCAATAAGGCTTTTTGTTCGGGCTGCTAGAATTGAGTCCAAAGGTGTTACCTTGGGTTTCAGGACCCCACAATTTCAGCTTCCGGAGCCCCTTACCGGGACGACCTGGACATTGGATGATTTTGAAGCTTATCCAGCTCTACTGGTTATGTTTATATGCAATCACTGTCCATTTGTTAAGCACCTGAAAAAAGACATTGTAAAGCTTACAAAGTTCTATATGGAGAAAGGACTTGCCGTCATTGCCATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGTCCAGAATTCATGGCAGAAGATGCTAAACTGTTTGGTTATCCTTTCCCATACCTATATGATGAGTCACAGGATGTTGCACAACATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTCAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTATCATGGTCAATTTGATGATTCACGCCCAAGTAATAATGTACCGGTCACTGGAAGAGACTTGAGCTTGGCAATAGATCGTGTTCTTAGTGGCCAACCTGTACCATCAGAGCAAAAACCTAGTGTTGGATGCAGCATAAAGTGGCACCCAGGGAAGAAGTTTTGA

>Glyma06g12930.2   sequence type=CDS   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGAGACTGAGACTCAAAGTGTCTTCAATTGGGTCACCTTTTCTGCAGTTAGGTTCTTCTGCAAGTGCAGCATGCTCTGTTTCCAAACTTGGTTTTCATCCACCACGCTTGCAACTCAACAAAAATTCACACCCAATAAGGCTTTTTGTTCGGGCTGCTAGAATTGAGTCCAAAGGTGTTACCTTGGGTTTCAGGACCCCACAATTTCAGCTTCCGGAGCCCCTTACCGGGACGACCTGGACATTGGATGATTTTGAAGCTTATCCAGCTCTACTGGTTATGTTTATATGCAATCACTGTCCATTTGTTAAGCACCTGAAAAAAGACATTGTAAAGCTTACAAAGTTCTATATGGAGAAAGGACTTGCCGTCATTGCCATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGTCCAGAATTCATGGCAGAAGATGCTAAACTGTTTGGTTATCCTTTCCCATACCTATATGATGAGTCACAGGATGTTGCACAACATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTCAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTATCATGGTCAATTTGATGATTCACGCCCAAGTAATAATGTACCGGTCACTGGAAGACTTGAGCTTGGCAATAGATCGTGTTCTTAG

Predicted protein sequences of Glyma06g12930

Limit To All Plant Sequences

>Glyma06g12930.1   sequence type=predicted peptide   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRLRLKVSSIGSPFLQLGSSASAACSVSKLGFHPPRLQLNKNSHPIRLFVRAARIESKGVTLGFRTPQFQLPEPLTGTTWTLDDFEAYPALLVMFICNHCPFVKHLKKDIVKLTKFYMEKGLAVIAISSNSVATHPQDGPEFMAEDAKLFGYPFPYLYDESQDVAQHFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKWHPGKKF*

>Glyma06g12930.2   sequence type=predicted peptide   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRLRLKVSSIGSPFLQLGSSASAACSVSKLGFHPPRLQLNKNSHPIRLFVRAARIESKGVTLGFRTPQFQLPEPLTGTTWTLDDFEAYPALLVMFICNHCPFVKHLKKDIVKLTKFYMEKGLAVIAISSNSVATHPQDGPEFMAEDAKLFGYPFPYLYDESQDVAQHFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPVTGRLELGNRSCS*

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