SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G78780 | AT | Annotation by Michelle Graham. TAIR10: pathogenesis-related family protein | chr1:29621447-29622431 REVERSE LENGTH=238 | SoyBase | E_val: 4.00E-83 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1KAK6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KAK6_SOYBN | SoyBase | E_val: 3.00E-176 | ISS |
| UniRef100_Q9ZV96 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F9K20.18 protein n=2 Tax=Arabidopsis thaliana RepID=Q9ZV96_ARATH | SoyBase | E_val: 2.00E-79 | ISS |
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Glyma06g12890 not represented in the dataset |
Glyma06g12890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g123700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12890.3 sequence type=transcript gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGAAATTAAAAACGGATCATCGTGAGTCATGTCAATCGCTAATCCTACAATTTAAATTATGCTTTTATGACAGGTTTGGCCTCAGGGTTCACTTGAAGAGCAGGTGCAGTCTCTAGTGAAGAATTGGGAGATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAGAGCTAGCAGCACAAGTTCAAGGAAGCCTTGAGGAAAAGGATGGCCATAAGTAAAAATTAACTGCAGTTGTTGCATCCAATAATGGCTTCTTGTTTGAATTTTAGTTTTTTTTACAATTATGTTTATATAAATAAAATTGTACTGATATTTACTACAAGCTACCCAAATCCAAGCAAATTAAGGTTGTAATACCCCCCCTCCCATCATGTAATATATAAGCTTGGTCAAATTATGAGCAATTTCTAGATAAGCTCCTGTCCAAATCTTCTGTAAGTTTATATATATTAATTCAATCATCATGAATCCCACATAAATTGAAAAAAGAAAGGAGTTTTTCCAACTTCCAATGGATTCAATTGTTTAAATAAAG >Glyma06g12890.4 sequence type=transcript gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGAAATTAAAAACGGATCATCGTGAGTCATGTCAATCGCTAATCCTACAATTTAAATTATGCTTTTATGACAGGTTTGGCCTCAGGGTTCACTTGAAGAGCAGGTGCAGTCTCTAGTGAAGAATTGGGAGATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGGTAACATAACTTCCATCCACAGATAATCATAAGCAACCATTTTCTTAACATTAATACTAAAATAATTAATGTTAAGAAGGTACAAAATGGATAAAATAATTATTAAGATTTTCTCAATAAGACAACTTTTCACATTTATGTACTTCAAATTCAAGCATGTTTCCTATCAACTTGATAATCTAAGTGATATTGAATTGAATTTCTTCTCGAATTTAAAATTTTGTAGATAAAAAAAGAAAATTTTTATTAAAAATAATAAGTCAGATTTTTTGATAAAAATTAATTATTAACAAAAAGCAATGAATCCTCTAATATACTGAAGTATGTTTTGATTAATTAGGCTGATGTCAATATAATTATATTACAGCTCTTTCCAGTCAACAATTCTATTTATTTTTTTATTGTTTGGGGTCATGGTATGCATGCAGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAGAGCTAGCAGCACAAGTTCAAGGAAGCCTTGAGGAAAAGGATGGCCATAAGTAAAAATTAACTGCAGTTGTTGCATCCAATAATGGCTTCTTGTTTGAATTTTAGTTTTTTTTACAATTATGTTTATATAAATAAAATTGTACTGATATTTACTACAAGCTACCCAAATCCAAGCAAATTAAGGTTGTAATACCCCCCCTCCCATCATGTAATATATAAGCTTGGTCAAATTATGAGCAATTTCTAGATAAGCTCCTGTCCAAATCTTCTGTAAGTTTATATATATTAATTCAATCATCATGAATCCCACATAAATTGAAAAAAGAAAGGAGTTTTTCCAACTTCCAATGGATTCAATTGTTTAAATAAAGGTTCTTG
>Glyma06g12890.1 sequence type=CDS gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTATCAAATGTTAGGGAGGACAACTACCGGTCCTATTTGCGCGAAGACACTGAGAAGAACACCAAATGGAGATATGGTGCCCCTCCAAATTACGACGTTGTCAACAAGCTATATGAAGAAGGCAGAACCAAGGTTTGGCCTCAGGGTTCACTTGAAGAGCAGGTGCAGTCTCTAGTGAAGAATTGGGAGATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAG >Glyma06g12890.3 sequence type=CDS gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAG >Glyma06g12890.4 sequence type=CDS gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGGTAACATAA
>Glyma06g12890.1 sequence type=predicted peptide gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSNVREDNYRSYLREDTEKNTKWRYGAPPNYDVVNKLYEEGRTKVWPQGSLEEQVQSLVKNWEMEMFHKVDLQDFRSIDPKKYTFSLNGRKPMTLEEMMKLGGGYIPMLQTSIPEKMRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKRHAPTGEKIQFYGMAIFTLDENSKVVKVEFFYDPAELLGGLLKGPEDGSVEDAIASCPILRNTG* >Glyma06g12890.3 sequence type=predicted peptide gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMFHKVDLQDFRSIDPKKYTFSLNGRKPMTLEEMMKLGGGYIPMLQTSIPEKMRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKRHAPTGEKIQFYGMAIFTLDENSKVVKVEFFYDPAELLGGLLKGPEDGSVEDAIASCPILRNTG* >Glyma06g12890.4 sequence type=predicted peptide gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMFHKVDLQDFRSIDPKKYTFSLNGRKPMTLEEMMKLGGGYIPMLQTSIPEKMRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKRHAPTGEKIQFYGMAIFTVT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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