Report for Sequence Feature Glyma06g12890
Feature Type: gene_model
Chromosome: Gm06
Start: 10050920
stop: 10052793
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g12890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78780 AT
Annotation by Michelle Graham. TAIR10: pathogenesis-related family protein | chr1:29621447-29622431 REVERSE LENGTH=238
SoyBase E_val: 4.00E-83 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KAK6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KAK6_SOYBN
SoyBase E_val: 3.00E-176 ISS
UniRef100_Q9ZV96 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F9K20.18 protein n=2 Tax=Arabidopsis thaliana RepID=Q9ZV96_ARATH
SoyBase E_val: 2.00E-79 ISS
Expression Patterns of Glyma06g12890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma06g12890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g123700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g12890
Transcripts of Glyma06g12890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g12890.3 sequence type=transcript gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAGAAATTAAAAACGGATCATCGTGAGTCATGTCAATCGCTAATCCTACAATTTAAATTATGCTTTTATGACAGGTTTGGCCTCAGGGTTCACTTGAAGAGCAGGTGCAGTCTCTAGTGAAGAATTGGGAGATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAGAGCTAGCAGCACAAGTTCAAGGAAGCCTTGAGGAAAAGGATGGCCATAAGTAAAAATTAACTGCAGTTGTTGCATCCAATAATGGCTTCTTGTTTGAATTTTAGTTTTTTTTACAATTATGTTTATATAAATAAAATTGTACTGATATTTACTACAAGCTACCCAAATCCAAGCAAATTAAGGTTGTAATACCCCCCCTCCCATCATGTAATATATAAGCTTGGTCAAATTATGAGCAATTTCTAGATAAGCTCCTGTCCAAATCTTCTGTAAGTTTATATATATTAATTCAATCATCATGAATCCCACATAAATTGAAAAAAGAAAGGAGTTTTTCCAACTTCCAATGGATTCAATTGTTTAAATAAAG
>Glyma06g12890.4 sequence type=transcript gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAGAAATTAAAAACGGATCATCGTGAGTCATGTCAATCGCTAATCCTACAATTTAAATTATGCTTTTATGACAGGTTTGGCCTCAGGGTTCACTTGAAGAGCAGGTGCAGTCTCTAGTGAAGAATTGGGAGATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGGTAACATAACTTCCATCCACAGATAATCATAAGCAACCATTTTCTTAACATTAATACTAAAATAATTAATGTTAAGAAGGTACAAAATGGATAAAATAATTATTAAGATTTTCTCAATAAGACAACTTTTCACATTTATGTACTTCAAATTCAAGCATGTTTCCTATCAACTTGATAATCTAAGTGATATTGAATTGAATTTCTTCTCGAATTTAAAATTTTGTAGATAAAAAAAGAAAATTTTTATTAAAAATAATAAGTCAGATTTTTTGATAAAAATTAATTATTAACAAAAAGCAATGAATCCTCTAATATACTGAAGTATGTTTTGATTAATTAGGCTGATGTCAATATAATTATATTACAGCTCTTTCCAGTCAACAATTCTATTTATTTTTTTATTGTTTGGGGTCATGGTATGCATGCAGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAGAGCTAGCAGCACAAGTTCAAGGAAGCCTTGAGGAAAAGGATGGCCATAAGTAAAAATTAACTGCAGTTGTTGCATCCAATAATGGCTTCTTGTTTGAATTTTAGTTTTTTTTACAATTATGTTTATATAAATAAAATTGTACTGATATTTACTACAAGCTACCCAAATCCAAGCAAATTAAGGTTGTAATACCCCCCCTCCCATCATGTAATATATAAGCTTGGTCAAATTATGAGCAATTTCTAGATAAGCTCCTGTCCAAATCTTCTGTAAGTTTATATATATTAATTCAATCATCATGAATCCCACATAAATTGAAAAAAGAAAGGAGTTTTTCCAACTTCCAATGGATTCAATTGTTTAAATAAAGGTTCTTG
Coding sequences of Glyma06g12890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g12890.1 sequence type=CDS gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCATTATCAAATGTTAGGGAGGACAACTACCGGTCCTATTTGCGCGAAGACACTGAGAAGAACACCAAATGGAGATATGGTGCCCCTCCAAATTACGACGTTGTCAACAAGCTATATGAAGAAGGCAGAACCAAGGTTTGGCCTCAGGGTTCACTTGAAGAGCAGGTGCAGTCTCTAGTGAAGAATTGGGAGATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAG
>Glyma06g12890.3 sequence type=CDS gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGTTGGATGAGAATTCAAAAGTCGTGAAGGTGGAGTTTTTTTATGATCCGGCAGAACTGTTGGGAGGTCTCCTGAAAGGTCCTGAGGATGGTAGTGTTGAAGATGCTATTGCAAGCTGTCCTATACTCAGGAACACCGGCTAG
>Glyma06g12890.4 sequence type=CDS gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAATGTTCCACAAGGTGGACCTGCAGGATTTCAGATCAATAGACCCAAAGAAATACACTTTCAGCCTGAACGGAAGGAAGCCTATGACTCTGGAAGAGATGATGAAGCTTGGTGGAGGGTATATACCAATGCTGCAAACCTCTATACCAGAGAAAATGAGGCCTTACAATCCCTATGAAGAAACAGCAGATTCATCCCATAAGGCTTTCACGACAACATTCCCACGTGGGTTTGCTTTGGAAATTCTGCACGTGTATTCTGGACCACCAGTGATCGTGTACAAGTTCAGGCACTGGGGCTACATGGAGGGTCCTTTCAAACGCCACGCCCCAACTGGAGAGAAAATTCAATTCTATGGAATGGCAATTTTCACGGTAACATAA
Predicted protein sequences of Glyma06g12890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g12890.1 sequence type=predicted peptide gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALSNVREDNYRSYLREDTEKNTKWRYGAPPNYDVVNKLYEEGRTKVWPQGSLEEQVQSLVKNWEMEMFHKVDLQDFRSIDPKKYTFSLNGRKPMTLEEMMKLGGGYIPMLQTSIPEKMRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKRHAPTGEKIQFYGMAIFTLDENSKVVKVEFFYDPAELLGGLLKGPEDGSVEDAIASCPILRNTG*
>Glyma06g12890.3 sequence type=predicted peptide gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEMFHKVDLQDFRSIDPKKYTFSLNGRKPMTLEEMMKLGGGYIPMLQTSIPEKMRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKRHAPTGEKIQFYGMAIFTLDENSKVVKVEFFYDPAELLGGLLKGPEDGSVEDAIASCPILRNTG*
>Glyma06g12890.4 sequence type=predicted peptide gene model=Glyma06g12890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEMFHKVDLQDFRSIDPKKYTFSLNGRKPMTLEEMMKLGGGYIPMLQTSIPEKMRPYNPYEETADSSHKAFTTTFPRGFALEILHVYSGPPVIVYKFRHWGYMEGPFKRHAPTGEKIQFYGMAIFTVT*