Glyma06g12880 - SoyBase

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Report for Sequence Feature Glyma06g12880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10046855
stop:	10048276
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_H2D7G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced nodulin n=1 Tax=Copaifera officinalis RepID=H2D7G7_9FABA	SoyBase	E_val: 4.00E-06	ISS
UniRef100_I1JYW8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYW8_SOYBN	SoyBase	E_val: 9.00E-22	ISS

Expression Patterns of Glyma06g12880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g12880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g123600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12880

Limit To All Plant Sequences

>Glyma06g12880.1   sequence type=CDS   gene model=Glyma06g12880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAACTGGGAGTGGTTGCAGTGATGTTGACGGCACAGTTACTGGATGTGATCGTCAACACTCTGAGCCAAGCAGCCATGAAGAAGGGCATGAATAACTTTGTATTCGTCATGTACTCCAATGCTTCCTCTTTCTCGAAGAGAACACTTCCTCCACTCTCGTATAACAACCTTGGCCTGTTATTTGTTGTTGGCTTGTTCAGCTCATACTTGTTTTCTCTCAATAAACTACATACTTGTGGTGTCAGAGAATACCCTGCAGAGTTGGTGGTGGTACTAATTCGCATTGCATTAACCTCTATACTATCTGTTCCTGCTGCACTGATTTCAGAAAAGGATCTAAAAGCTTTTAAACTGGGATTTAATATGGAGCTGATAGGAGCATTGCACTGA

Predicted protein sequences of Glyma06g12880

Limit To All Plant Sequences

>Glyma06g12880.1   sequence type=predicted peptide   gene model=Glyma06g12880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKELGVVAVMLTAQLLDVIVNTLSQAAMKKGMNNFVFVMYSNASSFSKRTLPPLSYNNLGLLFVVGLFSSYLFSLNKLHTCGVREYPAELVVVLIRIALTSILSVPAALISEKDLKAFKLGFNMELIGALH*

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