Report for Sequence Feature Glyma06g12870
Feature Type: gene_model
Chromosome: Gm06
Start: 10037995
stop: 10040662
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g12870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G28050 AT
Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr3:10442984-10445216 FORWARD LENGTH=367
SoyBase E_val: 5.00E-78 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00892 PFAM
EamA-like transporter family
JGI ISS
UniRef100_B9SZH1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9SZH1_RICCO
SoyBase E_val: 2.00E-107 ISS
UniRef100_C6TIF5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIF5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g12870
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma06g12870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g123500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g12870
Coding sequences of Glyma06g12870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g12870.4 sequence type=CDS gene model=Glyma06g12870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGGAATTGGGCGTGGTTGCAATCCTCTTTTCAATAGAGTTCTTGGACGTTATCGTCTACACTGTAAGCAAAGCAGCCATGAAGAAGGGCATGAATGACTTTGTCTTTGTCATGTACTCCAATGCCTTCGCAACTTGCCTCCTCCTTCCCATAACCTTCTTCTTTTACAGGAAAAGACCTCTTCCTCCACTCACATATTTCATAGTTGCCCAATTGTTTATTAATGGCTTTTTAAGTTGCAGTGTTCAGATGCTCAGGTTTTTTGGAATAGGTTACAGCTCTCCCACTTTGGCCACTGCTATGTCTGATTTAATCCCTGCTTTTACCTTCATTCTTGCCATCGTCTTCAGGATGGAAAAATTGGATTGGAAAACTAACAGTACTCGGGCCAAGTCCATTGGCACATTGGTATCAATCACTGGAGCCTTGATAATTACTCTGTACAAAGGCCAGGCAATCATAAACAATCACCCATCTAATAAATTGTTCCCCAAAAATCTTAATTCATCTGAGCAATTTGACTGGGTAGTAGGGGCAGTGTTGCTTGCGGGTCATAGCTTTGTTCTCTCACTGTTGTTTATAGTTCAGACATGGATAATCAGAAATTACCCTGCAGAGCTTGTCATAGTGGTCACTCGCGGTATATTAGTTGCTATGCTATCTATCCCACCTTCGCTGATTTCAGTAACGGATCCAAAAGATTTGAGATTGGGATTTGATGTGCATTTGATAGCTATTGCATTGCAAGCAATTTTCGGTGTATCCCTTCGAAGTATTGTTCATATATGGGTCATGAGCAAGAAGGGGCCTCTGTATGTTGCAATGTTTAAGCCAATTGGAATAATCTTTGCGGTCATCATGGGAATTGCGTTTCTTGGTGACTCTATCTATCTTGGAAGTGTTCTTGGAGCAGCCATAGTGGTTATTGGATTTTATGCTGTTATTTGGGGGAAAAGCCAAGAGCAAGCAAAGGAAGAGTGTGAAGTCTATGACTCGGAATCATACTCGCCCGTTGTCCCTCTTTTGAAGAAGAAGAAAATGGAGGAATAG
Predicted protein sequences of Glyma06g12870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g12870.4 sequence type=predicted peptide gene model=Glyma06g12870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKELGVVAILFSIEFLDVIVYTVSKAAMKKGMNDFVFVMYSNAFATCLLLPITFFFYRKRPLPPLTYFIVAQLFINGFLSCSVQMLRFFGIGYSSPTLATAMSDLIPAFTFILAIVFRMEKLDWKTNSTRAKSIGTLVSITGALIITLYKGQAIINNHPSNKLFPKNLNSSEQFDWVVGAVLLAGHSFVLSLLFIVQTWIIRNYPAELVIVVTRGILVAMLSIPPSLISVTDPKDLRLGFDVHLIAIALQAIFGVSLRSIVHIWVMSKKGPLYVAMFKPIGIIFAVIMGIAFLGDSIYLGSVLGAAIVVIGFYAVIWGKSQEQAKEECEVYDSESYSPVVPLLKKKKMEE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
