Glyma06g12850 - SoyBase

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Report for Sequence Feature Glyma06g12850

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10026116
stop:	10029411
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70260	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr1:26457067-26459338 REVERSE LENGTH=375	SoyBase	E_val: 3.00E-113	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_F4I5D5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nodulin MtN21 /EamA-like transporter protein n=1 Tax=Arabidopsis thaliana RepID=F4I5D5_ARATH	SoyBase	E_val: 1.00E-110	ISS
UniRef100_I1KAK2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAK2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g12850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g123300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12850

Limit To All Plant Sequences

>Glyma06g12850.1   sequence type=CDS   gene model=Glyma06g12850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTTAATAAGACTAAGATGTCTGAGGTGCTGCCATTCATAATCATGGTGATTATGGAAGGTTGGACTATAGGACTCACGATTTTTGCCAAAACTGCAATAACTAATGGAATGAGCCCACTTGTGTTCATTGTTTATACCAATGCTTTGGCCACTATAATTCTGTTCCCTTGTTCCTTTTTAACACACCAAGAGGACAGAAAGGAGAGGCCATCTTTTACTTTCTCTTTGTTCATGCGATTCTTGTTCCTCGGTTTTATAGGGATAACGATGACTCAGGCCTTTTTATTCCTGGGCCTAAGTTATAGTTCGCCAATACTTGTGTGTGCCATGGGACACTTGATCCCAACGTTTAACTTTCTTCTCTCTGTCATTTTCAGGAAGACAGAGATGAATTTGAGAAGCCCTGGTATGCAAGTCCAATTAATTGGTATCTTGGTATCGATAATGGGAGCAGTGGTAGCAGAGTTCTTCAAGGGACCACTTGTAAGACCCTCTTCTCATGACCACCTTAAACACGCTAATAAGCAATATCTGGTATTCTCCTCAACACCAGAGTTTTGGGTTCTTGGTGGCGCTTTGCTTGCTGCTTCTTTCTTCTCTCTTTCAATTTTCAACCTTTTCCAGAAAGAAACCGTCGAGCGATATCCGGAACCAATGAAAGTGCTTTCTTATTCTAACTTACTTGGAACCATCCTTAGTGCAATAGTCTCGTGGATAGTAGAGAGGGAAATAAATGTTTGGAAGATAAAGCGTAACAAGGATCTCATTCTCATTGTTCTAACTGCACTCGTTGGTGGTGTGATTCGTCCCAATATTCATGTATGGTTCACTCGAATCAAGGGTCCACTTTATGTGCCACTTTTCAAGCCCTTTGGTATTGCCTTTGCCACTACTTTTGCACTTTGCTTCTTTTCTAACAGTCTTCATTATGGAAGCGTGATAGGAACAACTACACTTGGAATGGGGTATTATACAGTAATGTATGGACAAATCAAAGGAAATGAAGAAGAGACAAGCTGTGACGATTGCTCATCAGATTCTTTGGACAAGAAGATACCTCTTTTGCAAGAAAAGATGGAAGAAGTGTGA

Predicted protein sequences of Glyma06g12850

Limit To All Plant Sequences

>Glyma06g12850.1   sequence type=predicted peptide   gene model=Glyma06g12850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVNKTKMSEVLPFIIMVIMEGWTIGLTIFAKTAITNGMSPLVFIVYTNALATIILFPCSFLTHQEDRKERPSFTFSLFMRFLFLGFIGITMTQAFLFLGLSYSSPILVCAMGHLIPTFNFLLSVIFRKTEMNLRSPGMQVQLIGILVSIMGAVVAEFFKGPLVRPSSHDHLKHANKQYLVFSSTPEFWVLGGALLAASFFSLSIFNLFQKETVERYPEPMKVLSYSNLLGTILSAIVSWIVEREINVWKIKRNKDLILIVLTALVGGVIRPNIHVWFTRIKGPLYVPLFKPFGIAFATTFALCFFSNSLHYGSVIGTTTLGMGYYTVMYGQIKGNEEETSCDDCSSDSLDKKIPLLQEKMEEV*

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