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Report for Sequence Feature Glyma06g12820

Feature Type:gene_model
Chromosome:Gm06
Start:10001013
stop:10008459
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g12820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77140AT Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 45 | chr1:28984163-28987681 FORWARD LENGTH=569 SoyBaseE_val: 0ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006816GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion transport SoyBaseN/AISS
GO:0006820GO-bp Annotation by Michelle Graham. GO Biological Process: anion transport SoyBaseN/AISS
GO:0006862GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide transport SoyBaseN/AISS
GO:0006882GO-bp Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006888GO-bp Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0006904GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis SoyBaseN/AISS
GO:0009306GO-bp Annotation by Michelle Graham. GO Biological Process: protein secretion SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0015696GO-bp Annotation by Michelle Graham. GO Biological Process: ammonium transport SoyBaseN/AISS
GO:0015802GO-bp Annotation by Michelle Graham. GO Biological Process: basic amino acid transport SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0043090GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid import SoyBaseN/AISS
GO:0043269GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ion transport SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0009705GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008565GO-mf Annotation by Michelle Graham. GO Molecular Function: protein transporter activity SoyBaseN/AISS
KOG1299 KOG Vacuolar sorting protein VPS45/Stt10 (Sec1 family) JGI ISS
PTHR11679Panther VESICLE PROTEIN SORTING-ASSOCIATED JGI ISS
PTHR11679:SF3Panther gb def: similarity vacuolar protein sorting-associated protein (sec1 family) encephalit JGI ISS
PF00995PFAM Sec1 family JGI ISS
UniRef100_I1KAJ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAJ9_SOYBN SoyBaseE_val: 0ISS
UniRef100_O49048UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting-associated protein 45 homolog n=1 Tax=Arabidopsis thaliana RepID=VPS45_ARATH SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g12820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12820
ParalogEvidenceComments
Glyma04g41950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g123000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g12820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g12820
>Glyma06g12820.1   sequence type=CDS   gene model=Glyma06g12820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTCTCATCCTCTGCGCGCGATTACATCAATCGCATCTTGCAGGACATCTCCGGCATGAAGATTCTCATCCTCGATTCTCAAACGGTAGGTATTGTGAGTGTCGTGTATTCACAGTCGGAGCTTCTTCAGAAAGAAGTGTTTTTGGTAGAGTTGGTAGATTCTATTTCCAAGTCAAACGAATCAATGTCGCATCTCAAGGCCGTCTACTTCCTTCGACCTACATCGGAGAATATCCAGCTTTTGCGCCGCCAGCTGGCTAGTCCTAGATTTGGAGAGTATCATCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACTTACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGATTTTGTTGCAATTGATCCTTATCATTTCACTTTGCACGTGCCTTCACATTACATATATATGCTCCCAGCTGTGGTAGATCCTTCAACAGTGCAGCGCTTCTCTGACCGGGTTGTTGATGGTCTTTCAGCTCTTTTTTTGGCATTAAAGCGAAGACCAGTAATTAGGTATCAAAGGACATCTGACATTGCAAAAAGGATAGCACAGGAAGCAGCTAAATTGATGTACCAAGAGGAAAGTGGTCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCACTGCTGTTAGTGATTGACAGGAGGGATGATCCTGTAACCCCATTACTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTAATAGGAATCCAAGACAACAAAGTGGACTTAAAATCCGTTGGTAAATTTCCAAAGGATCAGGAGGAGATTGTGTTGTCATCAGAACAAGATTCCTTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAACGGATGGTTGATGAATTTCAGCAAGTGTCAAAAAGTAACCAGAACATCCAAACAATAGAGGACATGGCCAAATTTGTTGATAATTATCCTGAGTACAGAAAAATGCATGGAAATGTGACTAAACATGTTACTTTAGTAACTGAAATGAGCAAGATAGTTGAAGAGCGAAAACTTATGTCAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGACAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGCATATCAGATGTGGACCGACTACGTTTGGTCATGCTGTATGCTTTACGATATGAGAAAGATAGCCCTGTTCAATTAATGCAGCTCTTCAACAAACTGGCTTCCAGATCTGCCAAGTACAAACCTGGGCTTGTCCAGTTTCTTCTGAAGCAAGCAGGTGTTGACAAGAGAACAGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCTCGTGGTTTGAAGGGTGTTGAGAATGTTTACACCCAGCATCAGCCACTTCTGTTTCAACTCATGGAAAGCATTGTCAAAGGGAGGTTGAGAGATGTGGACTACCCATTTGTTGGAAATCACTTTCAACAGGGAAGGCCGCAGGATGTGATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCACGGTCTGTTGCTTTACAAAATGCCAGCAATACCGGTGTTCGTTTTATACTTGGTGGTTCTTCTGTTCTTAATTCTAAAAGGTTTTTGAGGGACTTGGAAGAAGCTCAAAGGGTAGCACGTTCTAGCACCACTGTTATTTGA
Predicted protein sequences of Glyma06g12820
>Glyma06g12820.1   sequence type=predicted peptide   gene model=Glyma06g12820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVSSSARDYINRILQDISGMKILILDSQTVGIVSVVYSQSELLQKEVFLVELVDSISKSNESMSHLKAVYFLRPTSENIQLLRRQLASPRFGEYHLFFSNILKDTQIHLLADSDEQEVVQQVQEFYADFVAIDPYHFTLHVPSHYIYMLPAVVDPSTVQRFSDRVVDGLSALFLALKRRPVIRYQRTSDIAKRIAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSVGKFPKDQEEIVLSSEQDSFFKANMYENFGDIGMNIKRMVDEFQQVSKSNQNIQTIEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMSVSQTEQELACNGGQGAAFEAVTNLLNNESISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQLMESIVKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGVRFILGGSSVLNSKRFLRDLEEAQRVARSSTTVI*






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