Glyma06g12800 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g12800

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9989747
stop:	9993879
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42240	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 42 \| chr5:16888717-16890931 FORWARD LENGTH=473	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
KOG1283	KOG	Serine carboxypeptidases	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G7KEB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7KEB8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYX4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12800

Paralog	Evidence	Comments
Glyma04g41970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g122800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g12800

Limit To All Plant Sequences

>Glyma06g12800.3   sequence type=transcript   gene model=Glyma06g12800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAACTTTCGTACATATCAGTATTTTCATTAAAAATACTATATTTTAACCAGTATATAAGAATCGAGGATCTCTCAGGAAATGGATAAAAAAGGTTGGGTTTCTTGCGAGTTGTGTCCGGTGTGGGACTTGGAGTTGTTGAGATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCATGTTGGGCACTGTTGGAGTTGAAGGGCACCCTGATGAGGATCTCATAGTAAGTTTACCTGGCCAACCCAAAGTTGAGTTCAAGCAATATGCAGGGTATGTTGATATTGATGTCAAACATGGGAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAGAATGTTCCTGACAAGAAGCCTCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCCTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAACAAATTCAATGTCTTGGAATAAAGCATCCAACCTCCTCTTTGTGGAGTCCCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAATTCTGGAGACTCGTCCACAGAAGTTTCCTTCCTACAGATCAAGGGAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGTTCATTCAACTAGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTGCACATAATATGTCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATCGTTGGCGATTATATAAACAACTATGATGTGATTTTCGATGTTTGTTATCCATCCATAGTTGAACAAGAATTGAGATTGAAAAAGATTGCTACTAAAATAAGCATAGGTGTAGATGTCTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTACCAATGGTCCATGTGCAGTGGTGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAATTCTTAAAAAGATTGTTCAAAACCATATTCCAGTTTGGGTATTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTTAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTTTTCAGTTCATTTGTGCATGGAAGGAGATTGCCAAATACAACAAGTCCTTCAATTGATGATTAATATTAATAATTAAGCTAAACTGCACATTTGGTTTTCCTATTTTTGTAAAAATGAGATTTTGGTTCCCTTGGTTTCTAATTCAAACATTTGGTCCCCTAGTTTGAATTAGAAATCAGGGGCACAAAATTCTATTTCTACCGAAATAGAGGAACCAAATGTGCAGTTTAGGCTAATAATTAGGAAAATAGATATCTGCCTGCCATATAACGAGTGGAAATTAATAGCAGGTTCTACACTCAAGCTAGTTGATTAATCTTAGATCTCAAGACTTTAGGCTAAAAGAGGAAGCAGTGAAAGAGAAGGGAGTGTCTCTCTAGGCCATTATTTATCAATGCATGGAAAAAGAGGGGGGAGTAAAAGGAATAAAAAAGAGAGAGATTCCATTCTTTGAGCCTATATATTGATTCTCAAGTTGCATATTGCATGTTCTACATTCTTTATTTGGAAGCACAGACGTGCTTAATTTATTCCTAAACCAAATGTACAAGAAAAAAGTATACTCTGTTTCGCAATTTGATTATTAACATATGTAAGCAGTCAAGTTGAGAGGGATTTATCTTTGTTTTGAAACTTTGACCGAATCATTTGTTGAATTTAATCCAAACCAAGACTCAAAATATGTGGACGGAACTATGCCAATCCTAATCTGAC

Coding sequences of Glyma06g12800

Limit To All Plant Sequences

>Glyma06g12800.2   sequence type=CDS   gene model=Glyma06g12800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGGTGTTGGTTGGTTGGGGTCTTGATTGTGGTGGGGTGTGCCTGCATGTTGGGCACTGTTGGAGTTGAAGGGCACCCTGATGAGGATCTCATAGTAAGTTTACCTGGCCAACCCAAAGTTGAGTTCAAGCAATATGCAGGGTATGTTGATATTGATGTCAAACATGGGAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAGAATGTTCCTGACAAGAAGCCTCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCCTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAACAAATTCAATGTCTTGGAATAAAGCATCCAACCTCCTCTTTGTGGAGTCCCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAATTCTGGAGACTCGTCCACAGCCACTGATATGCTTCTGTTCTTGCTGAAATGGTACCAGAAGTTTCCTTCCTACAGATCAAGGGAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGTTCATTCAACTAGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTGCACATAATATGTCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATCGTTGGCGATTATATAAACAACTATGATGTGATTTTCGATGTTTGTTATCCATCCATAGTTGAACAAGAATTGAGATTGAAAAAGATTGCTACTAAAATAAGCATAGGTGTAGATGTCTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTACCAATGGTCCATGTGCAGTGGTGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAATTCTTAAAAAGATTGTTCAAAACCATATTCCAGTTTGGGTATTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTTAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTTTTCAGTTCATTTGTGCATGGAAGGAGATTGCCAAATACAACAAGTCCTTCAATTGATGATTAA

>Glyma06g12800.3   sequence type=CDS   gene model=Glyma06g12800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGGTATGTTGATATTGATGTCAAACATGGGAGAAGCCTCTTCTACTATTTTGTGGAGGCTGAGAATGTTCCTGACAAGAAGCCTCTCACTCTTTGGCTCAATGGAGGCCCGGGATGTTCCTCCATTGGAGGAGGTGCCTTCACTGAGTTGGGTCCCTTTTATCCCAAAGGTGATGGACGTGGTCTCCGAACAAATTCAATGTCTTGGAATAAAGCATCCAACCTCCTCTTTGTGGAGTCCCCAGCTGGAGTTGGTTGGTCATACTCAAACACAACTTCAGATTACAATTCTGGAGACTCGTCCACAGAAGTTTCCTTCCTACAGATCAAGGGAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTATATACCACAGTTAGCTAATGTTCTTTTGGACTACAATGTTCATTCAACTAGTTTCAAATTCAATATTAAAGGAGTTGCTATTGGAAACCCACTTCTGAAACTTGATCGTGATGCACAAGCAACATATGAATACTTCTGGTCACATGGAATGATTTCAGATGAAATTGGCCTAGCCATTACGAATGATTGCGATTTTGATGATTATGTCTTTGCAAGTGCACATAATATGTCTAAATCATGCAATGAAGCAATAAATGAAGCAAATGAAATCGTTGGCGATTATATAAACAACTATGATGTGATTTTCGATGTTTGTTATCCATCCATAGTTGAACAAGAATTGAGATTGAAAAAGATTGCTACTAAAATAAGCATAGGTGTAGATGTCTGTATGACTTATGAAAGAAGTTTTTATTTCAACCTCCCTGAGGTTCAGAAGGCTCTCCATGCAAACCGTACCAATCTTCCGTACCAATGGTCCATGTGCAGTGGTGTCTTAAATTATAGCGACACTGATCCTAACATAGATATCCTTCCAATTCTTAAAAAGATTGTTCAAAACCATATTCCAGTTTGGGTATTCAGTGGAGACCAAGATTCTGTTGTGCCATTACTAGGTTCTCGAACACTAATTCGTGAACTAGCTCATGATCTTAAGTTCAAGATTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTTGGAGGTTGGGTAACCGAGTATGGAAATTTGTTGACTTTTGCCACTGTAAGAGGAGCTGCTCACATGGTACCCTATGCACAACCTTCAAGAGCACTCCATCTTTTCAGTTCATTTGTGCATGGAAGGAGATTGCCAAATACAACAAGTCCTTCAATTGATGATTAA

Predicted protein sequences of Glyma06g12800

Limit To All Plant Sequences

>Glyma06g12800.2   sequence type=predicted peptide   gene model=Glyma06g12800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRCWLVGVLIVVGCACMLGTVGVEGHPDEDLIVSLPGQPKVEFKQYAGYVDIDVKHGRSLFYYFVEAENVPDKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKGDGRGLRTNSMSWNKASNLLFVESPAGVGWSYSNTTSDYNSGDSSTATDMLLFLLKWYQKFPSYRSRELFLTGESYAGHYIPQLANVLLDYNVHSTSFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAITNDCDFDDYVFASAHNMSKSCNEAINEANEIVGDYINNYDVIFDVCYPSIVEQELRLKKIATKISIGVDVCMTYERSFYFNLPEVQKALHANRTNLPYQWSMCSGVLNYSDTDPNIDILPILKKIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNTTSPSIDD*

>Glyma06g12800.3   sequence type=predicted peptide   gene model=Glyma06g12800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQGMLILMSNMGEASSTILWRLRMFLTRSLSLFGSMEARDVPPLEEVPSLSWVPFIPKVMDVVSEQIQCLGIKHPTSSLWSPQLELVGHTQTQLQITILETRPQKFPSYRSRELFLTGESYAGHYIPQLANVLLDYNVHSTSFKFNIKGVAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLAITNDCDFDDYVFASAHNMSKSCNEAINEANEIVGDYINNYDVIFDVCYPSIVEQELRLKKIATKISIGVDVCMTYERSFYFNLPEVQKALHANRTNLPYQWSMCSGVLNYSDTDPNIDILPILKKIVQNHIPVWVFSGDQDSVVPLLGSRTLIRELAHDLKFKITVPYGAWFHKGQVGGWVTEYGNLLTFATVRGAAHMVPYAQPSRALHLFSSFVHGRRLPNTTSPSIDD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain