Glyma06g12780 - SoyBase

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Report for Sequence Feature Glyma06g12780

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9979015
stop:	9982400
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77120	AT	Annotation by Michelle Graham. TAIR10: alcohol dehydrogenase 1 \| chr1:28975509-28977216 FORWARD LENGTH=379	SoyBase	E_val: 0	ISS
GO:0001666	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hypoxia	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010310	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process	SoyBase	N/A	ISS
GO:0045333	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular respiration	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NAD) activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0022	KOG	Alcohol dehydrogenase, class III	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF4	Panther	ARYL-ALCOHOL DEHYDROGENASE	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_Q43016	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-1F n=1 Tax=Phaseolus acutifolius RepID=Q43016_PHAAT	SoyBase	E_val: 0	ISS
UniRef100_UPI0001890AF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001890AF8 related cluster n=1 Tax=unknown RepID=UPI0001890AF8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12780

Paralog	Evidence	Comments
Glyma04g41990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g122600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g12780

Limit To All Plant Sequences

>Glyma06g12780.2   sequence type=transcript   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGCAGTTTACGTGGCATTGTATTGTGTACCGAACGAAACCATGGCGCCGCTTGGAAACTACTAAACCAAAGTGGTATTGTCATTTGTTTGCAGAATCTTTCGGTGGTCTCTCTTTCTCTCTCTCTCACCTTCTTTGCTTTCTCACTAATCACTATAAATAAAATCTTCACTCTGTCCTTCCACCACACAATTCAATACCATTTATCAACTCACTCATCAATCTCGTTTGTTCTCACTAACTATTACTTCATCATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGTAAGCTTCAATATTGATTGAATTGTGCACTCTATAAGGACATTCATTCATATATATTGATGTTTTTTTTTTTTATCGCCAAATGTTAAATGTTAATTGTTAGTAGTGAGATTTGAACTCACGACCTCATCTCACTCCCTTATAACTCTTGTTCATATTGATATTGATATCTTAATTGGTAATGTGGTCTTGTGTGCAGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAAATCTATATCAGACCAATGATGACATGACATGGTCCCTGTTGGGGGACTGAGTTCTCTTTCTGGTTGTGAAAAGAAGAAAATAAATTTCATATATGATATATATCCCTTTAGGATTATTGAATTTGTGAAAACTTGTGAGTTTGAGTGTAGAGAATGATAGGGCCTTTGCTGCTGTTATTGTCTAATGCATGATAAATAAAATGTCGTTTTTTTGTCGATTTGTTGTTCTTATGGTAATTTAAGTGACAGATATGTAGTACCACAATTGTTCAACGCATGTCCAATGGTGTGGGGTTTTGGTAAAAAAAAAAAGTCACGTTCAAATGGCTTGAACTTTATTGGATTTATCAAACTTGATTTTTCATTTATCATTATGTTTGGT

>Glyma06g12780.3   sequence type=transcript   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAGAATCTTTCGGTGGTCTCTCTTTCTCTCTCTCTCACCTTCTTTGCTTTCTCACTAATCACTATAAATAAAATCTTCACTCTGTCCTTCCACCACACAATTCAATACCATTTATCAACTCACTCATCAATCTCGTTTGTTCTCACTAACTATTACTTCATCATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAAATCTATATCAGACCAATGATGACATGACATGGTCCCTGTTGGGGGACTGAGTTCTCTTTCTGGTTGTGAAAAGAAGAAAATAAATTTCATATATGATATATATCCCTTTAGGATTATTGAATTTGTGAAAACTTGTGAGTTTGAGTGTAGAGAATGATAGGGCCTTTGCTGCTGTTATTGTCTAATGCATGATAAATAAAATGTCGTTTTTTTGTCGATTTGTTGTTCTTATGGTAATTTAAGTGACAGATATGTAGTACCACAATTGTTCAACGCATGTCCAATGGTGTGGGGTTTTGGTAAAAAAAAAAAGTCACGTTCAAATGGCTTGAACTTTATTGGATTTATCAAACTTGATTTTTCATTTATCATTATGTTTGGT

Coding sequences of Glyma06g12780

Limit To All Plant Sequences

>Glyma06g12780.1   sequence type=CDS   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAA

>Glyma06g12780.2   sequence type=CDS   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGTAAGCTTCAATATTGATTGA

>Glyma06g12780.3   sequence type=CDS   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAA

Predicted protein sequences of Glyma06g12780

Limit To All Plant Sequences

>Glyma06g12780.1   sequence type=predicted peptide   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE*

>Glyma06g12780.2   sequence type=predicted peptide   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGVSFNID*

>Glyma06g12780.3   sequence type=predicted peptide   gene model=Glyma06g12780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE*

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