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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77120 | AT | Annotation by Michelle Graham. TAIR10: alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379 | SoyBase | E_val: 0 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0045333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular respiration | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004022 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alcohol dehydrogenase (NAD) activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0022 | KOG | Alcohol dehydrogenase, class III | JGI | ISS | |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | ISS | |
| PTHR11695:SF4 | Panther | ARYL-ALCOHOL DEHYDROGENASE | JGI | ISS | |
| PF00107 | PFAM | Zinc-binding dehydrogenase | JGI | ISS | |
| PF08240 | PFAM | Alcohol dehydrogenase GroES-like domain | JGI | ISS | |
| UniRef100_Q43016 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase-1F n=1 Tax=Phaseolus acutifolius RepID=Q43016_PHAAT | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0001890AF8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001890AF8 related cluster n=1 Tax=unknown RepID=UPI0001890AF8 | SoyBase | E_val: 0 | ISS |
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Glyma06g12780 not represented in the dataset |
Glyma06g12780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g41990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g122600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12780.2 sequence type=transcript gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGGCAGTTTACGTGGCATTGTATTGTGTACCGAACGAAACCATGGCGCCGCTTGGAAACTACTAAACCAAAGTGGTATTGTCATTTGTTTGCAGAATCTTTCGGTGGTCTCTCTTTCTCTCTCTCTCACCTTCTTTGCTTTCTCACTAATCACTATAAATAAAATCTTCACTCTGTCCTTCCACCACACAATTCAATACCATTTATCAACTCACTCATCAATCTCGTTTGTTCTCACTAACTATTACTTCATCATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGTAAGCTTCAATATTGATTGAATTGTGCACTCTATAAGGACATTCATTCATATATATTGATGTTTTTTTTTTTTATCGCCAAATGTTAAATGTTAATTGTTAGTAGTGAGATTTGAACTCACGACCTCATCTCACTCCCTTATAACTCTTGTTCATATTGATATTGATATCTTAATTGGTAATGTGGTCTTGTGTGCAGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAAATCTATATCAGACCAATGATGACATGACATGGTCCCTGTTGGGGGACTGAGTTCTCTTTCTGGTTGTGAAAAGAAGAAAATAAATTTCATATATGATATATATCCCTTTAGGATTATTGAATTTGTGAAAACTTGTGAGTTTGAGTGTAGAGAATGATAGGGCCTTTGCTGCTGTTATTGTCTAATGCATGATAAATAAAATGTCGTTTTTTTGTCGATTTGTTGTTCTTATGGTAATTTAAGTGACAGATATGTAGTACCACAATTGTTCAACGCATGTCCAATGGTGTGGGGTTTTGGTAAAAAAAAAAAGTCACGTTCAAATGGCTTGAACTTTATTGGATTTATCAAACTTGATTTTTCATTTATCATTATGTTTGGT >Glyma06g12780.3 sequence type=transcript gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAGAATCTTTCGGTGGTCTCTCTTTCTCTCTCTCTCACCTTCTTTGCTTTCTCACTAATCACTATAAATAAAATCTTCACTCTGTCCTTCCACCACACAATTCAATACCATTTATCAACTCACTCATCAATCTCGTTTGTTCTCACTAACTATTACTTCATCATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAAATCTATATCAGACCAATGATGACATGACATGGTCCCTGTTGGGGGACTGAGTTCTCTTTCTGGTTGTGAAAAGAAGAAAATAAATTTCATATATGATATATATCCCTTTAGGATTATTGAATTTGTGAAAACTTGTGAGTTTGAGTGTAGAGAATGATAGGGCCTTTGCTGCTGTTATTGTCTAATGCATGATAAATAAAATGTCGTTTTTTTGTCGATTTGTTGTTCTTATGGTAATTTAAGTGACAGATATGTAGTACCACAATTGTTCAACGCATGTCCAATGGTGTGGGGTTTTGGTAAAAAAAAAAAGTCACGTTCAAATGGCTTGAACTTTATTGGATTTATCAAACTTGATTTTTCATTTATCATTATGTTTGGT
>Glyma06g12780.1 sequence type=CDS gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAA >Glyma06g12780.2 sequence type=CDS gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCCCCACTTGACAAAATTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGGGCTACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCCATTTTTGGACTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGTAAGCTTCAATATTGATTGA >Glyma06g12780.3 sequence type=CDS gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGTCGAGCACAGTTGGTCAAGTCATCAAATGCAAAGCTGCGGTTTCATGGGAGGCAGGGAAGCCACTTGTGATTGAAGAAGTAGAGGTGGCACCACCACAAGCTGGTGAAGTGCGTTTGAAGATCCTCTACACCTCTCTTTGCCACACTGATGTTTACTTCTGGGAAGCCAAGGGCCAAACTCCATTGTTTCCTCGTATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAGGGTGTGACTCATCTCAAACCAGGGGACCATGCCCTCCCAGTGTTTACCGGGGAGTGTGGAGAATGCCCTCATTGCAAGTCAGAGGAGAGCAACATGTGTGATCTTCTCAGGATCAACACTGATAGGGGTGTCATGATCCATGACAGCCAAACAAGATTTTCTATTAAGGGACAACCTATTTACCATTTTGTTGGTACCTCCACATTCAGTGAATACACTGTTGTTCATGCCGGATGTGTTGCCAAAGTCAACCCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATTATTGGGGTTGATTTAGTTTCTAGCAGATTTGAAGAAGCTAAGAAGTTTGGGGTCAATGAATTTGTGAACCCAAAAGACCATGACAAGCCTGTACAAGAGGTGATTGCTGCAATGACGAATGGGGGTGTGGATCGTGCTGTTGAATGTACTGGCAGCATCCAAGCCATGATCTCGGCATTCGAATGCGTCCACGATGGTTGGGGTGTTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCAGTGAATTTCTTGAACGAGAGAACTCTAAAGGGTACCTTCTACGGAAACTACAAACCCCGCACTGATCTTCCTTCTGTTGTGGAGAAGTACATGAATGGGGAATTGGAACTGGAGAAATTCATCACTCACACAGTTCCATTCTCAGAGATTAACAAGGCTTTTGATTACATGCTGAAAGGGGAGTCCATCAGATGCATCATTCGAATGGGGGAGTAA
>Glyma06g12780.1 sequence type=predicted peptide gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE* >Glyma06g12780.2 sequence type=predicted peptide gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAPLDKICVLSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGVSFNID* >Glyma06g12780.3 sequence type=predicted peptide gene model=Glyma06g12780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSSTVGQVIKCKAAVSWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDSQTRFSIKGQPIYHFVGTSTFSEYTVVHAGCVAKVNPAAEGARISGASRIIGVDLVSSRFEEAKKFGVNEFVNPKDHDKPVQEVIAAMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPVNFLNERTLKGTFYGNYKPRTDLPSVVEKYMNGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMGE*
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