SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G43850 | AT | Annotation by Michelle Graham. TAIR10: SEUSS transcriptional co-regulator | chr1:16617872-16621596 FORWARD LENGTH=877 | SoyBase | E_val: 0 | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0048467 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gynoecium development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003712 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transcription cofactor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
| GO:0060090 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: binding, bridging | SoyBase | N/A | ISS |
| PTHR10378 | Panther | LIM DOMAIN BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR10378:SF6 | Panther | JGI | ISS | ||
| UniRef100_B9S2M5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcriptional corepressor SEUSS, putative n=1 Tax=Ricinus communis RepID=B9S2M5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KAI4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KAI4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g12720 not represented in the dataset |
Glyma06g12720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g42070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g121500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12720.1 sequence type=CDS gene model=Glyma06g12720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCGAATTCAGAAACCCCAAGTGGAAAGTTCGAGCCTTTTCGTTCCTTCTCAGTTCGTTGATCAGTTCCCAGATTCTGTTACTGTTCAATTTCGCAATTTTCAACTCTCGACCGTGATATCGAAAAAGATGGTGCCTCCGGGGCCACCCACTCCCATTGGTGGTGCCCAGTCTGTTTCGCCTTCTCTTTTAAGATCGAATTCGGGAATGCTAGGAGCTCAAGGAGGTCCCATGCCACCACAGTCGTCTTTCCCTTCACTCGTCTCACCACGCACTCAGTTCAACAATATGAACATTCTGGGAAATATGTCCAATGTGACTTCCATACTGAATCAGTCTTTCCCAAATGGAGTTCCGAATCCCGGGCTCTCTGGTCCAGGAAGCAGCCAGCGTGGAGCAATTGATACTGGAGCTGAAACAGATCCGCTCTCCAGTGTTGGAAATGGAATGAGCTTCAATAATTCTTCATCCACATTTGTACAGTCAAGTATAGTGAATGCTGCTTCCTCTGGTCAAGGTCAGGGACAACAATTTTCTAACCCTTCCAGTAACCAGCTGTTGCCAGATCAACAGCATTCCCAACAGCTTGAACCTCAAAATTTCCAACACGGTCAGCAGTCAATGCAACAGTTCTCTGCCCCTCTGAATACACAGCAACCGCCGCAGCCACAGCCGCATTTTCAATCAATTCGGGGAGGGATAGGTGGTATGGGACCAGTAAAGCTAGAGCAGGTAAGCAACGATCAACTTGGACAACAGCAGCAGCAGCAGTTGCAATCCTTGAGGAATCTTGCTTCAGTGAAGTTGGAACCACAACAAATGCAGACGATGAGAACTCTGGGACCTGTTAAAATGGAGCCTCAGCATTCTGATCAACCATTATTTTTGCAGCAGCAGCAACAACAGCAACAGCAACAGTTTCTCCACATGTCAAGTCAATCGTCTCAGGCTGCTGCTGCCCAGATCAATCTTTTGCGCCATCACCGGCTTTTACAGTTACAACAACAACACCAGCAGCAACAGCTCTTGAAGGCAATGCCTCAACAAAGGTCCCAACTACCACAACAATTTCAACAGCAGAATATGTCTATGAGATCTCCTGCGAAGCCAGCATATGAACCAGGGATGTGTGCTAGGCGGCTGACACATTACATGTATCAGCAACAACATAGACCTGAAGATAATAATATTGAGTTCTGGAGAAAGTTTGTTGCTGAGTATTTTGCTCCTAATGCCAAGAAGAAATGGTGTGTTTCAATGTATGGAAGTGGGAGACAAACAACTGGAGTTTTCCCTCAGGATGTATGGCACTGTGAAATATGTAATCGCAAGCCTGGCCGTGGATTTGAAGCAACTGTTGAGGTTCTTCCACGGCTTTTCAAGATAAAGTATGAAAGTGGTACTTTGGAAGAACTACTTTATGTTGACATGCCTCGTGAATATCATAATTCCTCTGGTCAGATTGTTTTAGATTATGCAAAAGCAATACAAGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTTCGAATAGTTTTCTCTCCAGACCTGAAGATATGTTCTTGGGAATTTTGTGCTCGGCGCCATGAGGAACTCATACCCAGGAGATTGTTGATACCACAGGTTAGTCAGCTTGGAGCAGTTGCTCAAAAATACCAGTCTTTTACTCAAAATGCAACACCCAATGTATCTGTTCCAGAATTACAAAATAATTGCAATATGTTTGTTGCATCAGCCCGTCAGTTGGTTAAAGCCTTAGAAGTGCCATTGGTTAATGATTTAGGATATACAAAGAGATATGTGCGCTGCCTACAGATATCAGAAGTGGTAAATAGTATGAAAGACTTGATAGATTACAGCCGAGAAACTGGGACTGGACCTATGGAGAGCTTAGCAAAATTCCCTAGGAGAACAAGTGGTTCAGCTGGACCTCGTGGTCAAGCACAACAGCATGAAGAACAATTACAGCAGCAGCAACAACAACAAATGGTGGCCCATAACTCAAATGGTGATCAAAACTCAGTACGAGCTGCTGCCATGCAAATTGCTTCTAGCAATGGTATGGTTAGTGTAAATAACTCTGTCAACCCAGCATCCACATCAACAACCACAAGCACTATTGTTGGTCTTCTTCACCAGAACTCTATGAATTCTAGACAACAAAATTCAATGAACAATGCAAGCAGTCCATATGGAGGTAGTTCTGTTCAGATTCCTTCCCCAGGTTCCTCCAGTACAGTGCCACAAGGCCAGCCAAACTCGTCCCCTTTTCAATCACCAACACCGTCCTCTTCTAACAACCCCCCACAAACATCTCACCCTGCTTTAACATCTGCCAATCACACAAGTACGACAAACTCACCAGCTAATATTTCCATGCAACAACAGCAGTCATCTATTTCTGGTGAACCTGACCCTAGTGATGCTCAAAGCTCAGTCCAGAAAATCATACATGAGATGATGATGTCCTCCCAGATTAATGGCAATGGTGGAATGGTCGGTGTTGGATCTCTTGGAAATGATGTGAAGAATGTAAGTGGTATTCTTCCAGTGAGTGCCAATACAGGGCTAAATGGTGGCAATGGCTTGGTGGGTAACGGCCCAATGAACAGTAATTCAGGCGTTGGGGTTGGTAATTATGGCACAATGGGTCTTGGTCAATCCGCTATGCCTAATGGAATCAGAACTGCTATGGTAAATAATTCAATCATGAATGGAAGGGGAGGAATGGCGTCTCTTGCCCGGGATCAAGCTATGAATCATCAACAAGATCTGTCAAACCAACTACTTAGTGGGCTAGGGGCAGTTGGTGGTTTTAATAATCTTCAATTTGATTGGAAACCTTCTCCTTGA
>Glyma06g12720.1 sequence type=predicted peptide gene model=Glyma06g12720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRIQKPQVESSSLFVPSQFVDQFPDSVTVQFRNFQLSTVISKKMVPPGPPTPIGGAQSVSPSLLRSNSGMLGAQGGPMPPQSSFPSLVSPRTQFNNMNILGNMSNVTSILNQSFPNGVPNPGLSGPGSSQRGAIDTGAETDPLSSVGNGMSFNNSSSTFVQSSIVNAASSGQGQGQQFSNPSSNQLLPDQQHSQQLEPQNFQHGQQSMQQFSAPLNTQQPPQPQPHFQSIRGGIGGMGPVKLEQVSNDQLGQQQQQQLQSLRNLASVKLEPQQMQTMRTLGPVKMEPQHSDQPLFLQQQQQQQQQQFLHMSSQSSQAAAAQINLLRHHRLLQLQQQHQQQQLLKAMPQQRSQLPQQFQQQNMSMRSPAKPAYEPGMCARRLTHYMYQQQHRPEDNNIEFWRKFVAEYFAPNAKKKWCVSMYGSGRQTTGVFPQDVWHCEICNRKPGRGFEATVEVLPRLFKIKYESGTLEELLYVDMPREYHNSSGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAVAQKYQSFTQNATPNVSVPELQNNCNMFVASARQLVKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETGTGPMESLAKFPRRTSGSAGPRGQAQQHEEQLQQQQQQQMVAHNSNGDQNSVRAAAMQIASSNGMVSVNNSVNPASTSTTTSTIVGLLHQNSMNSRQQNSMNNASSPYGGSSVQIPSPGSSSTVPQGQPNSSPFQSPTPSSSNNPPQTSHPALTSANHTSTTNSPANISMQQQQSSISGEPDPSDAQSSVQKIIHEMMMSSQINGNGGMVGVGSLGNDVKNVSGILPVSANTGLNGGNGLVGNGPMNSNSGVGVGNYGTMGLGQSAMPNGIRTAMVNNSIMNGRGGMASLARDQAMNHQQDLSNQLLSGLGAVGGFNNLQFDWKPSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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