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Report for Sequence Feature Glyma06g12691

Feature Type:gene_model
Chromosome:Gm06
Start:9856756
stop:9858972
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g12691
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G17950AT Annotation by Michelle Graham. TAIR10: myb domain protein 52 | chr1:6177764-6179063 FORWARD LENGTH=249 SoyBaseE_val: 1.00E-65ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:2000652GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of secondary cell wall biogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_I6LFW8UniRef Annotation by Michelle Graham. Most informative UniRef hit: R2R3-MYB transcription factor MYB3 (Fragment) n=1 Tax=Picea glauca RepID=I6LFW8_PICGL SoyBaseE_val: 6.00E-69ISS
UniRef100_UPI0002339480UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339480 related cluster n=1 Tax=unknown RepID=UPI0002339480 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g12691
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g12691 not represented in the dataset
Glyma06g12691 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12691
ParalogEvidenceComments
Glyma04g42110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12691 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g121200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g12691
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g12691
>Glyma06g12691.1   sequence type=CDS   gene model=Glyma06g12691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATTCTTCAGCTGGTGAAGACACCAAGACTTGCCCTCGTGGCCACTGGAGACCCGCTGAGGATGAAAAGCTTAGACAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATCGCTGAAAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTGGACCCGAGAATCAACAGAAGGCCATTCACGGAAGAGGAAGAAGAGAGGCTACTCGCGGCACATCGCATTCACGGGAACAAGTGGGCACTCATAGCGAGGCTTTTCCCCGGTCGAACCGATAATGCTGTGAAGAATCACTGGCACGTTATAATGGCGAGAAAGCAAAGGGAACAGTCCAAGTTATGTGGGAAGAGAAGCTTCCAAGACGTTTACAACGATTCCAACAACACGTTCCTCGAAAAAAGAACAACACCACAATCTCATCATCAAGACATGTTGTTTAGTACGAGATTTGGGTTAGAGAATGGAATATTCTTCGACTTTCGAAGCCTCGATAAAAATAAGGATGATAGTAATAATAATAATCATAGGATAGTGTCAGATACTCCCTCTAGTAATTCTCTGGCGTCTTGGAATTTTGGTTCTGTGCCAACCACCACCACCAAAGGAGCGAGAGACAATTTCAATAACACTTCTTGTTCTTCTAGTGTTTATCTCTCGGAATGTTCCAGAAGCTCAGATAGATCTTTTCTTTACAGAATTTATCCAAATCCTGCATTCTCTCTTCCCAACTACAAGAGGGTTGTTCCAACAAGTCCTTTAATTAGTACTTTCCTTGGTTCTTCTGATCATGATGGAAGGATAAAGAAGGACTTGATGAGTTTCTGTGATAATAATACAAACTCATCATCCACATTCACCAAGTTGAAGGCATCCACGGAGAAAGATCAACAACAAACAAATGAAGATGAGACCAATAATATCAAGCCCAAGGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTAA
Predicted protein sequences of Glyma06g12691
>Glyma06g12691.1   sequence type=predicted peptide   gene model=Glyma06g12691   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNNTFLEKRTTPQSHHQDMLFSTRFGLENGIFFDFRSLDKNKDDSNNNNHRIVSDTPSSNSLASWNFGSVPTTTTKGARDNFNNTSCSSSVYLSECSRSSDRSFLYRIYPNPAFSLPNYKRVVPTSPLISTFLGSSDHDGRIKKDLMSFCDNNTNSSSTFTKLKASTEKDQQQTNEDETNNIKPKEVPFIDFLGVGV*






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