Report for Sequence Feature Glyma06g12580
Feature Type: gene_model
Chromosome: Gm06
Start: 9739949
stop: 9742651
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g12580
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G76980 AT
Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:28926466-28927242 REVERSE LENGTH=258
SoyBase E_val: 3.00E-26 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_B9RRD9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RRD9_RICCO
SoyBase E_val: 5.00E-08 ISS
UniRef100_I1KAG8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAG8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g12580
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g12580
Paralog Evidence Comments
Glyma04g42240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g12580 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g119800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g12580
Coding sequences of Glyma06g12580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g12580.1 sequence type=CDS gene model=Glyma06g12580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTGATCCAAGAACACACCACCCCACCAATTCTTTTGAATTGTACGACGCAGCACCACACAAACCTCACACATGGGAAGCTACGAACAGTTCCGGTTTGTGGCCTTCGAAACCAGCTTTCGAGGAGGTAGAGGTTGATGATTCCGGAATATGTTCACCTCCCATGTGGACAACGAGCCCCGCACGCCGCAAGAACAACCTCCGTAGCCTCTCGCCGACGTCGAGGACGCAAGCCATAGTGAGTGGGCAGAGGGAGCTCATGGAGATGGTGAAGAACATGCCAGAGTCCAACTACGAGCTCTCTTTGAAGGACCTCGTGGAGCACCACAGGGTTGTTGATGCTACTAGACAAGAGAAAAATGTGGTGGAAGAGAGAAAAAACTTGAGCAGCGTGTACATGAAGAGAGAAAAAAGTAGAAAGGTTGATAATAATAATAAGATGGCACAGGTGAAGAGGAACGGGAACATTGATCGTGGAGGGTTCTACCTCAAAATGGGTCTTCCTTTTCCTTTTGGATCAAAGGACAAGAAGAAGAAGATGAAAAAGAAAAATGAGTCCTTGGGGAATAGTAGTAGTTCGAGAGTTACCCCTAAACCTTCTGATGGATCAGCAAAGGGTGGTGGTGTTGTTGATAAGGAGTGGTGGAAGAAGAGTCCTTTGGCGTGTAAAGAGAGTGATAGTGGTGAATCAAGTATCAATAGTGAGAGTGGGAAGAGCTCCGGTAGCAGTAGTAGCAATAGCAGCAGTAGCAGGAGTAACAGCAGGCGTGAGAACAGTGGTAAGCGTTGCTGGCCTTTCATCCGCAGACCCAAAAGTCGAACACAAAAAAAGTAA
Predicted protein sequences of Glyma06g12580
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g12580.1 sequence type=predicted peptide gene model=Glyma06g12580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLDPRTHHPTNSFELYDAAPHKPHTWEATNSSGLWPSKPAFEEVEVDDSGICSPPMWTTSPARRKNNLRSLSPTSRTQAIVSGQRELMEMVKNMPESNYELSLKDLVEHHRVVDATRQEKNVVEERKNLSSVYMKREKSRKVDNNNKMAQVKRNGNIDRGGFYLKMGLPFPFGSKDKKKKMKKKNESLGNSSSSRVTPKPSDGSAKGGGVVDKEWWKKSPLACKESDSGESSINSESGKSSGSSSSNSSSSRSNSRRENSGKRCWPFIRRPKSRTQKK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
