Glyma06g12540 - SoyBase

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Report for Sequence Feature Glyma06g12540

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9708525
stop:	9715675
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64030	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr5:25624965-25628257 FORWARD LENGTH=829	SoyBase	E_val: 0	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
PTHR10108	Panther	METHYLTRANSFERASE	JGI		ISS
PTHR10108:SF55	Panther	PUTATIVE EARLY-RESPONSIVE TO DEHYDRATION STRESS PR	JGI		ISS
PF03141	PFAM	Putative methyltransferase	JGI		ISS
UniRef100_B9S2Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2Q5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233947C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233947C related cluster n=1 Tax=unknown RepID=UPI000233947C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12540

Paralog	Evidence	Comments
Glyma04g42270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g119400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12540

Limit To All Plant Sequences

>Glyma06g12540.1   sequence type=CDS   gene model=Glyma06g12540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTGGGGAAGAATTCCCAAGGCAAGGGGAGGAAGTTGTCAAACTACTGTTCAACCGTCTCTGTGGCTGTGTTTGTTGCATTTTGTTTAGTTGGTGTATGGATTGTATTGTCATCCATTGTTCCAATTCAGAATTCAGTCATTCAGGTATCTGAGACTGAGACAATTAATGATGATGTTAAAAATGTAGCAAGTGATTCCAAGCAATTTGAAGACAGATCTGGTGATATATCAGAAGATTCAACACGGGGATCTAGCCAGACTAAAAAATCTCAGAGTGGTGATAGCCATCCAGAAAACCAGGATGACCAAAAGGGAATTGAAAAAGTGTCTGATAATACTGCAGAAGAAAACCAGGAGGTTGTTGGGGACAACTCAGATGAAAAGAATGATTTGGAGAAGGGTCTGGAGAATACTATTGAGGAGAATGATCAAATGAGGAATGTCAAGCCGAGCACTGACGAGACGGAGAAAGAATCAGATAGAAGCTTAAATTCAGAATCTGAAGAAACAGAAACTTCGAATGATCAAATTCATGACGATGAACTTAGAGGATCAATGGAAACTTTAGATGAAAAAGAATCTGACAAGAGCACAAATGATAACAAATTAGGGACAGAAAAGAGTATGGATGAAGCCACACAACAAGATGAGATGGTTGGCGAGACTGCGGAGGACAAAAAACATCTGCATTCAGAGGCAACACAAAGTACTGGAGGGAGTAACACAGAAAGCCATGAAAACAATCCAGCTTCTAAAGAAATTTTAGTTACTGGTACCTCATCAGAAATTTTGATCGAAACTAGCACTGAAAATGGAACATGGTCAACTCAAGCTGCAGAGTCACAGCATGAGAAGGAATCACAGAAGTCTTTGGTTTCTATTGACAGCAGAACATATGACTGGAAACTTTGTAATACAACTACAGGATCAGAGTACATTCCTTGCCTTGACAATTGGAAAGCAATTAGAAAGCTTCAGAGCATAAGCCACTATGAACATCGTGAGAGGCACTGTCCTGATGAAGCTACCACTTGTCTTGTTTCTCTGCCTGAGGGTTATAGAAGCCCAATTAGGTGGCCCAAAAGCAGGGAAATGATATGGTACAAAAATGCTCCACATACAAAACTCGTTGTAGATAAGGGTCATCAAAACTGGGTCAAAGTTACTGGTGAATACCTTACTTTTCCTGGTGGTGGAACACAGTTTAAACATGGCGCTCTTAATTACATTGAATTCATTCAGAAATCTCTTCCCAAAATTGCATGGGGGAAGAGAAGTCGTGTGATATTGGATGTTGGGTGTGGGGTAGCCAGCTTTGGAGGCTATCTGTTTGAAAAAGACGTTCTGACCATGTCATTTGCTCCAAAAGATGTACACGAGGCACAAGTGCAATTTGCACTGGAACGGGGAATTCCTGCCACATTAGGTGTCATGGGCACTGTAAGATTACCCTACCCCGGTTCTGTCTTTGATCTTCTCCACTGTGCTCGTTGTAGAGTCCCTTGGCACGTAGAAGGTGGCAAGCTGCTCTTGGAGCTTAATCGTGTATTACGCCCTGGAGGTTACTTTGTATGGTCTGCTACTCCAGTGTACCAAAAGGATCCAGAAGATGTTGAGATTTGGAAAGCAATGGGTGAAATTACAAAGTCAATGTGTTGGGATCTGGTGGTAATTGCAAAGGACAAATTGAATGGAGTGGCAGCAGCAATATATAGAAAACCAACTGACAATGAATGCTATAACAACAGAATAAAAAATGAGCCATCAATGTGCAGCGAATCTGATGATCCAAATACAGCTTGGAATGTATCACTACAGGCTTGTATGCACAAAGTGCCCGTAGATGCATCAGAGCGTGGATCAATCTGGCCTGAGCAATGGCCACTGAGGTTGGAGAAACCACCTTACTGGATAGACTCTCAGGCTGGTGTTTATGGAAGAGCTGCTTCAGTGGAATTCACTGCTGATTACAAGCATTGGAAAAACGTTATTTCCCACTTGTATTTGAATGGAATGGGTATCAATTGGTCTTCAGTAAGAAATGTCATGGACATGAAAGCTGTTTATGGAGGGTTTGCTGCGGCACTCAGAGCCCTGAAATTGAATGTTTGGGTAATGAATGTGGTTCCAATTGATTCTCCGGACACACTGCCAATAATATATGAGCGTGGATTATTCGGTATTTATCATGATTGGTGTGAATCATTCAATACTTACCCTAGATCATATGATCTGCTCCATGCTGACTCTATATTCTCAACACTTAAGGAAAAGTGCAATAAAGTAGCAGTGATTGCAGAAGTTGATAGGATCCTGAGACCAGAAGGATATTTGGTCATAAGAGACAATGTTGAAACTATTGGTGAGATAGAGAGCTTGGCTAAATCTCTACAATGGGATATTAGGTTGACATATTCCAAAAATGGAGAAGGATTACTTTGCATTCAGAAGACATTCTGGCGTCCAACAAAGGTTGAAACAGTTGCATCAGCCATTGCATGA

Predicted protein sequences of Glyma06g12540

Limit To All Plant Sequences

>Glyma06g12540.1   sequence type=predicted peptide   gene model=Glyma06g12540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGKNSQGKGRKLSNYCSTVSVAVFVAFCLVGVWIVLSSIVPIQNSVIQVSETETINDDVKNVASDSKQFEDRSGDISEDSTRGSSQTKKSQSGDSHPENQDDQKGIEKVSDNTAEENQEVVGDNSDEKNDLEKGLENTIEENDQMRNVKPSTDETEKESDRSLNSESEETETSNDQIHDDELRGSMETLDEKESDKSTNDNKLGTEKSMDEATQQDEMVGETAEDKKHLHSEATQSTGGSNTESHENNPASKEILVTGTSSEILIETSTENGTWSTQAAESQHEKESQKSLVSIDSRTYDWKLCNTTTGSEYIPCLDNWKAIRKLQSISHYEHRERHCPDEATTCLVSLPEGYRSPIRWPKSREMIWYKNAPHTKLVVDKGHQNWVKVTGEYLTFPGGGTQFKHGALNYIEFIQKSLPKIAWGKRSRVILDVGCGVASFGGYLFEKDVLTMSFAPKDVHEAQVQFALERGIPATLGVMGTVRLPYPGSVFDLLHCARCRVPWHVEGGKLLLELNRVLRPGGYFVWSATPVYQKDPEDVEIWKAMGEITKSMCWDLVVIAKDKLNGVAAAIYRKPTDNECYNNRIKNEPSMCSESDDPNTAWNVSLQACMHKVPVDASERGSIWPEQWPLRLEKPPYWIDSQAGVYGRAASVEFTADYKHWKNVISHLYLNGMGINWSSVRNVMDMKAVYGGFAAALRALKLNVWVMNVVPIDSPDTLPIIYERGLFGIYHDWCESFNTYPRSYDLLHADSIFSTLKEKCNKVAVIAEVDRILRPEGYLVIRDNVETIGEIESLAKSLQWDIRLTYSKNGEGLLCIQKTFWRPTKVETVASAIA*

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