Glyma06g12500 - SoyBase

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Report for Sequence Feature Glyma06g12500

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9673668
stop:	9675080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21510	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; Has 380 Blast hits to 286 proteins in 63 species: Archae - 0; Bacteria - 6; Metazoa - 254; Fungi - 44; Plants - 13; Viruses - 5; Other Eukaryotes - 58 (source: NCBI BLink). \| chr1:7531534-7532505 REVERSE LENGTH=323	SoyBase	E_val: 1.00E-29	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9LPK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F24J8.12 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LPK8_ARATH	SoyBase	E_val: 5.00E-27	ISS
UniRef100_UPI0002339478	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339478 related cluster n=1 Tax=unknown RepID=UPI0002339478	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12500

Paralog	Evidence	Comments
Glyma04g42310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g119000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12500

Limit To All Plant Sequences

>Glyma06g12500.1   sequence type=CDS   gene model=Glyma06g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCTGCGTTAGCAAATGCAGGCCCGAATACAAACCCTCCCAAGAAGAACAACAACAACATAATCAACACCACTTCAACTTCAACCACGTTCAACACAAGCTTCCAATCTCATCACAAACTCCACCACCACTTCCACCAACCCTTTACTCCTCAACAAAAATCTCACCCTCCCCACCTTCTCCAACCTCTTCCACTTCCTCAATCTCCTCCTTCACATGCACCACTTCCAACACCATCTCTTCAGCCTCTTCTTTATCCACCGCTTCCTCTTCCTTGAGCTCCAAGGACAGGTCCTTCTCTAACGAGTTCCTCTGGTCGTGCTACAAAGACAACCCTCACATCATCACTCGCATCAACTCTCTCAGGGATGCCACCTCTCTCTCCTTCTTGCCACCAACTAAACCTAATAGAAAGCTTGTAAACATAAACCCCTCACCGCCAAAACCCAACTTGGCTTCACTGAATAAGCGCTCTCCGCCACCACAATCGTTTTCCATGCCACAGAAGAGGGTTCGATCAAATTCTCCAACGAACCTAACACGACAGAAGAGTTTCCGAAAGGACACGGAGAGGTCTATTACTATTAATCATGCTTCCAACGTGCAGAGTAGGTCGCTAATTAGGTCACCCTCTCCCAGCAGAAGATTCAATGGAGACAAATGTGAAAGTGCTAATTTGGCTACAACGATGAATAGTTCCAAGGTTAATGGTGTTATAAGTGGAGTTCATTCGAATTCTCATCATTCTGTTTTGTCTTCTAGGAGGAAAGAGAGTGTTAAAGCGGCGAGTCCCAATAATAATTGTTCACGAAGAGTATTTCATTCTGGTTTGAGAAACACTCGCGAGACTTCTTGCACTTTGGGATTGGGGGTTAGTCCTAAAGTTGATGAAACCGTGGTTAAGGATGTGGTGTCTGACTATGACATGGACTTAACTCTGATGGAGGATATTGACAACCCTCTTATCTCCTTGGATTGTTTTATCTTTTTGTAG

Predicted protein sequences of Glyma06g12500

Limit To All Plant Sequences

>Glyma06g12500.1   sequence type=predicted peptide   gene model=Glyma06g12500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCCVSKCRPEYKPSQEEQQQHNQHHFNFNHVQHKLPISSQTPPPLPPTLYSSTKISPSPPSPTSSTSSISSFTCTTSNTISSASSLSTASSSLSSKDRSFSNEFLWSCYKDNPHIITRINSLRDATSLSFLPPTKPNRKLVNINPSPPKPNLASLNKRSPPPQSFSMPQKRVRSNSPTNLTRQKSFRKDTERSITINHASNVQSRSLIRSPSPSRRFNGDKCESANLATTMNSSKVNGVISGVHSNSHHSVLSSRRKESVKAASPNNNCSRRVFHSGLRNTRETSCTLGLGVSPKVDETVVKDVVSDYDMDLTLMEDIDNPLISLDCFIFL*

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