SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27420 | AT | Annotation by Michelle Graham. TAIR10: carbon/nitrogen insensitive 1 | chr5:9684119-9685225 FORWARD LENGTH=368 | SoyBase | E_val: 8.00E-17 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
| GO:0043562 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen levels | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22764 | Panther | RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). | JGI | ISS | |
| PTHR22764:SF21 | Panther | OS08G0484200 PROTEIN | JGI | ISS | |
| UniRef100_G7J368 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL5F n=1 Tax=Medicago truncatula RepID=G7J368_MEDTR | SoyBase | E_val: 1.00E-16 | ISS |
| UniRef100_I1KAF7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAF7_SOYBN | SoyBase | E_val: 4.00E-96 | ISS |
|
Glyma06g12460 not represented in the dataset |
Glyma06g12460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12460.2 sequence type=CDS gene model=Glyma06g12460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGTGCGACTGTGTCAATTTCACCGAACGGGTCGTTATACACCAGCAGAAAATGTGGCAATGAAGTGTGCGGTGTGCTTAGGCGAGTTTGAAGAGTGTGACATGATAAGAAAAACTGTTAAGAAGCAACCTCAGAGTAAACATGTCCAATGTCGGACTCTCCAGCGTCCTCCTCCTCAGGCCCCCATCATAGCCATCAACGACGCCACCCTCTGCCTCGAAGGCAACCAAGAAGTGATCGATAAGTGCCCTTGTCCTTGTTTACTCGACGGTGAAGGAGAATGTGGCAGTGGAGGGTGTGACGATGCACTTATCGATAACTTGGTCGTTTCTGCAAAGCAGGAAGGCACCAAAGACGACAACAGCGACGGGACCCAAGGAGGAGGACGCTGTGGAGTTGGACACATGGACACAAGACAGTGTCTGACTCCTCAATGTCCACCTCCTCAAGTTCCCGTTGCCGCCATCAGTGACACCTGCCTCTGCCTCAAAAGCGACCAAGAAGTGATCAATAAGTGCCCTGACTTTGTTTACTCAACCGTGAAGGAGAATGTGGCAGTGGAGTGTGCAGTGTGCTTGAGCGAGTTTGAAGAGTGTGACATGGTAAAGATTCAACCAAAATGTGAACATATTTTCCAACAGCATTGTATTGATGTGTGGTCATCTTCTCACATAAACTGTCCCATATGTCAAAGATGA
>Glyma06g12460.2 sequence type=predicted peptide gene model=Glyma06g12460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVRLCQFHRTGRYTPAENVAMKCAVCLGEFEECDMIRKTVKKQPQSKHVQCRTLQRPPPQAPIIAINDATLCLEGNQEVIDKCPCPCLLDGEGECGSGGCDDALIDNLVVSAKQEGTKDDNSDGTQGGGRCGVGHMDTRQCLTPQCPPPQVPVAAISDTCLCLKSDQEVINKCPDFVYSTVKENVAVECAVCLSEFEECDMVKIQPKCEHIFQQHCIDVWSSSHINCPICQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
