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Report for Sequence Feature Glyma06g12440

Feature Type:gene_model
Chromosome:Gm06
Start:9616427
stop:9619325
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g12440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08455AT Annotation by Michelle Graham. TAIR10: BTB/POZ domain-containing protein | chr4:5375891-5376922 FORWARD LENGTH=243 SoyBaseE_val: 9.00E-92ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR26379Panther FAMILY NOT NAMED JGI ISS
PTHR26379:SF191Panther JGI ISS
PF00651PFAM BTB/POZ domain JGI ISS
UniRef100_B9S2S7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S2S7_RICCO SoyBaseE_val: 2.00E-93ISS
UniRef100_I1KAF5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAF5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g12440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12440
ParalogEvidenceComments
Glyma04g42350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g118200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g12440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g12440
>Glyma06g12440.1   sequence type=CDS   gene model=Glyma06g12440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAGCGTGCGTGAGAGACAGCACATCATGGTACGGAATCGGAGAAGGATGCCTCCGCGGCGGTGCACGGCGTCTATGGGCAGCAGCAACGGGAGCGAGAGCGATGCGTCAGACTTGGTGATGCGGTGCCTCTCGTGCGAGGAGGAATACGACATGGACGACTCGGGAACCTGCAGGGAGTGCTACCAGGAGGCCAACGAGGCTGAGGAGGAGCTCCGCCGCGAGATCGAAGAGCTCAAATCCAAAGTCTCCTTCCTCACTCTCCCCTATCCCAATCTAAACGCTTCCACCGCCGATATCATCCTCGTTCCCGTCGACGACTCCGACGCCGTTCCCATTCCCGCTCACAAGCACCTTCTGGTTAGTCGCTCTCCTGTTTTCAAAGCAATGCTTGAGAACGATATGGCAGAAAGGCGGAGTGGCACCATCAAGATTTCTGACATATCATATGATACCCTTAGTGCTTTTGTTAATTATTTATACACTGCTGAAGCGTCCCTTGATAACGAATTGGCCTGTAACCTGTTGGTTTTAGGAGAAAAGTATCAGGTGAAGCATCTCAAGACATATTGTGAAAAGTATTTGATCGCCAAAATGAATTGGAATAAAGCTATTTCTAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACGAAGTGCGTCCTTGGCAGTGATCTTGGACAACATGGACCTGCTCACTCAAAATGAATGTTATGCGGAGCTGGTGGACACTAATCCTCGTCTTGTTGTGGAAATATATGAAACATATATCGGCAAGCAATTAAATACTGCAGGCGCATTTTAG
Predicted protein sequences of Glyma06g12440
>Glyma06g12440.1   sequence type=predicted peptide   gene model=Glyma06g12440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
RSVRERQHIMVRNRRRMPPRRCTASMGSSNGSESDASDLVMRCLSCEEEYDMDDSGTCRECYQEANEAEEELRREIEELKSKVSFLTLPYPNLNASTADIILVPVDDSDAVPIPAHKHLLVSRSPVFKAMLENDMAERRSGTIKISDISYDTLSAFVNYLYTAEASLDNELACNLLVLGEKYQVKHLKTYCEKYLIAKMNWNKAISNYAFAYQYNCKQLRSASLAVILDNMDLLTQNECYAELVDTNPRLVVEIYETYIGKQLNTAGAF*






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