Glyma06g12430 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g12430

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9605651
stop:	9614120
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52560	AT	Annotation by Michelle Graham. TAIR10: UDP-sugar pyrophosphorylase \| chr5:21331230-21334573 FORWARD LENGTH=614	SoyBase	E_val: 0	ISS
GO:0006011	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-glucose metabolic process	SoyBase	N/A	ISS
GO:0009226	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar biosynthetic process	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0033356	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-L-arabinose metabolic process	SoyBase	N/A	ISS
GO:0046398	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-glucuronate metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0052573	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-D-galactose metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0090406	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: pollen tube	SoyBase	N/A	ISS
GO:0003983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:glucose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0010491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:arabinose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
GO:0017103	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:galactose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0047338	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP:xylose-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0047350	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucuronate-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
GO:0051748	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UTP-monosaccharide-1-phosphate uridylyltransferase activity	SoyBase	N/A	ISS
KOG2388	KOG	UDP-N-acetylglucosamine pyrophosphorylase	JGI		ISS
PTHR11952	Panther	UDP- GLUCOSE PYROPHOSPHORYLASE	JGI		ISS
PTHR11952:SF2	Panther	UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1	JGI		ISS
PF01704	PFAM	UTP--glucose-1-phosphate uridylyltransferase	JGI		ISS
UniRef100_I1KAF3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAF3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q09WE7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UDP-sugar pyrophosphorylase 1 n=1 Tax=Glycine max RepID=USP1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12430

Paralog	Evidence	Comments
Glyma04g42370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g118100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g12430

Limit To All Plant Sequences

>Glyma06g12430.4   sequence type=transcript   gene model=Glyma06g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCACTGGCAAAAAAAGGGTGAAAGAGGAGTAATGATTCACGCAGCTATAGCTGGTAGCAAATATTCACCGCCACAAAATGTAGAATAAATCCCTCTAGCGTCACTCCGTGAGTCTCGCTTGCGACGGTGGATGTTTGGAACCTGGTGGTGCAACCTACGGCGATGGCGGAGGCGGCGGCGACGGTGGCGACGCGTGGTGGTATCACGTGACGTAGAGTGTGGGTCCCATTAACTAACTGAGCGTGACCCGTGCCTTCCAGTCAGAAGTGAAGTTGACGTGTTGTTGGATCAGACTCAGATCCACATAATCACAGGCACCCCCGGTTCACCAGTTAATAATCATAAAATCATAATCCTAAAAATAACAAACAACAGAATTTGCATTTATTTTTCATGCTTGTTCTTCTTCTGTCTTCACACCACCACCACCACCACCTTCCACTTCCACTCTCTTCTTCAGCGATTCCATTTCCATGGGTTCCTCCCTCGGCGACAACTTCAACCTTCTCTCTCCTCAACAGCAAGAGCTGGTTAAGGTGCTACTGGATAACGGCCAAGAGCACCTGTTTCGCGATTGGCCAGCTCCCGGCGTCGACGATAACCACAAGAAAGCTTTCTTTGACCAGTTGACTCGGCTCGATTCGAGTTACCCTGGTGGTCTGGAATCATACATCAAAAACGCTAAACGGCTCTTGGCTGATTCTAAGGCTGGCAGAAACCCTTTCGACGGCTTTACACCTTCCGTTCCAACGGGTGAGACTTTGGCATTTGGTGATGAGAGCTACATCAAATTTGAGGAAGCAGGTGTACTTGAAGCTCGGAAAGCTGCGTTTGTTCTTGTTGCCGGTGGTCTTGGCGAGCGTTTAGGATACAGTGGGATTAAGCTTGCTCTTCCTGCAGAAAGCACTACTGGAACATGTTTTGTACAACAATACATTGAATCTATATTGGCTCTTCAAGAAGCCAGCTCACAAGGTGAATCCCAGACACAGATTCCTCTTGTTATTATGACATCTGATGACACCCATGGACGTACTTTAGAGTTATTAGAATCAAATTCTTATTTTGGTTTGCAACCCACGCAAGTAACACTTTTAAAGCAGGAAAAAGTTGCATGCTTAGAAGATAACGATGCCAGGCTTGCATTGGAACCACAAAACAAGTACAAAATTCAGACAAAACCTCATGGACATGGTGATGTGCATGCGCTTCTTTTTTCAAGTGGCATTCTGAAAGTATGGTATGAAGCTGGGTTGAAATGGGTTTTATTTTTTCAAGATACAAATGGGCTTTTATTCAAGGCAATTCCATCAGCACTGGGCGTCAGTGCTGCCAAACAGTACCATGTTAACTCTCTTGCAGTACCTCGGAAAGCAAAAGAAGCTATTGGTGGAATTACCAGACTCACTCACTCTGATGGGAGGTCTATGGTGATAAATGTGGAATACAATCAGCTAGATCCTCTTCTCAGAGCAAGTGGATACCCTAATGGTGATGTAAATTGTGAGACTGGCTACTCCCCATTTCCAGGAAATATTAACCAATTGATTTTAGAACTTGGTCCTTACATTGAAGAGCTCTCAAAAACAGGAGGTGCCATACAGGAGTTTGTTAACCCAAAATATAAGGATGCCAGCAAAACTTCATTTAAGTCCTCAACTCGACTTGAATGTATGATGCAAGACTATCCAAAAACGTTGCCCCTATCTGCCAGGGTTGGGTTCACGGTGATGGAAACATGGCTTGCTTATGCACCCGTGAAGAATAATGCTGAGGATGCTGCTAAGGTGCCGAAAGGAAATCCATACCATAGTGCAACTTCTGGAGAAATGGCCATCTATCGTGCAAATAGCATTATTCTCAAAAAGGCTGGTGTCCAAGTAGCAGATCCAGTAGTGCAGGTCTTCAATGGGCAAGAGGTTGAAGTTTGGCCTCGTATCACATGGAAGCCAAAATGGGGTCTGACTTTTAATCGGATCAAGGGCAAAGTCAGTGGAAATTGCTCCATTTCCCTAAGGTCTACTCTGGCTATTAAGGGTCCAAATATATTTATTGAAAATCTGTCCGTAGATGGGGCTCTAATCATTGACGCTGTGGATGATGCAGAGGTAAACGTGAGTGGCTCAGTTCAAAACGATGGGTGGATCCTTGAAACTATTGACTACAAAGATGCCTCGGAGCCTGAGGTGTTGAGAATCAGGGGTTTTAAATTTAACAAAATTGAGCAGCTGGAAACGAAATACTCCGAGCCTGGCAAATTTCACTTGAAGGCTTGAACATGCATCTGTTGGGATCAGAAGTTTTGCAGAGTTTCTCTCCTCTCCCCTCCCCCCCAACCTTTTAGGTGTTTGATGGGGATAAATGCTGATGTACTATTTTGTTCATAAGTTTTGCCCCCACTTCGATTAGAGAAACTATTTATGCATTCCTAGCTCAATGTCTAAAGAATCTGAGTCCATTTGTATTGGTGTGATAGAAACTTGAGCAGATTCATTATGTGTGCATATGGAAGACGGTTGTCGGTTGACGTGCCATTTAATAAGGTGCCAACAAGTTGGACTAATATTGATTGTTTTACCCATCCTATACACTGGATCTCAATCTGTTACCTTTTTTTGTAGTTTTGTTACACCAAAGGGGCAAAATATACAAGGACACTTAATACATTATTTTTGTTTTATCTCGATTATACTTTAAATT

Coding sequences of Glyma06g12430

Limit To All Plant Sequences

>Glyma06g12430.3   sequence type=CDS   gene model=Glyma06g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCTCCCTCGGCGACAACTTCAACCTTCTCTCTCCTCAACAGCAAGAGCTGGTTAAGGTGCTACTGGATAACGGCCAAGAGCACCTGTTTCGCGATTGGCCAGCTCCCGGCGTCGACGATAACCACAAGAAAGCTTTCTTTGACCAGTTGACTCGGCTCGATTCGAGTTACCCTGGTGGTCTGGAATCATACATCAAAAACGCTAAACGGCTCTTGGCTGATTCTAAGGCTGGCAGAAACCCTTTCGACGGCTTTACACCTTCCGTTCCAACGGGTGAGACTTTGGCATTTGGTGATGAGAGCTACATCAAATTTGAGGAAGCAGGTGTACTTGAAGCTCGGAAAGCTGCGTTTGTTCTTGTTGCCGGTGGTCTTGGCGAGCGTTTAGGATACAGTGGGATTAAGCTTGCTCTTCCTGCAGAAAGCACTACTGGAACATGTTTTGTACAACAATACATTGAATCTATATTGGCTCTTCAAGAAGCCAGCTCACAAGGTGAATCCCAGACACAGATTCCTCTTGTTATTATGACATCTGATGACACCCATGGACGTACTTTAGAGTTATTAGAATCAAATTCTTATTTTGGTTTGCAACCCACGCAAGTAACACTTTTAAAGCAGGAAAAAGTTGCATGCTTAGAAGATAACGATGCCAGGCTTGCATTGGAACCACAAAACAAGTACAAAATTCAGACAAAACCTCATGGACATGGTGATGTGCATGCGCTTCTTTTTTCAAGTGGCATTCTGAAAGTATGGTATGAAGCTGGGTTGAAATGGGTTTTATTTTTTCAAGATACAAATGGGCTTTTATTCAAGGCAATTCCATCAGCACTGGGCGTCAGTGCTGCCAAACAGTACCATGTTAACTCTCTTGCAGTACCTCGGAAAGCAAAAGAAGCTATTGGTGGAATTACCAGACTCACTCACTCTGATGGGAGGTCTATGGTGATAAATGTGGAATACAATCAGCTAGATCCTCTTCTCAGAGCAAGTGGATACCCTAATGGTGATGTAAATTGTGAGACTGGCTACTCCCCATTTCCAGGAAATATTAACCAATTGATTTTAGAACTTGGTCCTTACATTGAAGAGCTCTCAAAAACAGGAGGTGCCATACAGGAGTTTGTTAACCCAAAATATAAGGATGCCAGCAAAACTTCATTTAAGTCCTCAACTCGACTTGAATGTATGATGCAAGACTATCCAAAAACGTTGCCCCTATCTGCCAGGGTTGGGTTCACGGTGATGGAAACATGGCTTGCTTATGCACCCGTGAAGAATAATGCTGAGGATGCTGCTAAGGTGCCGAAAGGAAATCCATACCATAGTGCAACTTCTGGAGAAATGGCCATCTATCGTGCAAATAGCATTATTCTCAAAAAGGCTGGTGTCCAAGTAGCAGATCCAGTAGTGCAGGTCTTCAATGGGCAAGAGGTTGAAGTTTGGCCTCGTATCACATGGAAGCCAAAATGGGGTCTGACTTTTAATCGGATCAAGGGCAAAGTCAGTGGAAATTGCTCCATTTCCCTAAGGTCTACTCTGGCTATTAAGGGTCCAAATATATTTATTGAAAATCTGTCCGTAGATGGGGCTCTAATCATTGACGCTGTGGATGATGCAGAGGTAAACGTGAGTGGCTCAGTTCAAAACGATGGGTGGATCCTTGAAACTATTGACTACAAAGATGCCTCGGAGCCTGAGGTGTTGAGAATCAGGGGTTTTAAATTTAACAAAATTGAGCAGCTGGAAACGAAATACTCCGAGCCTGGCAAATTTCACTTGAAGGCTTGA

>Glyma06g12430.4   sequence type=CDS   gene model=Glyma06g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCTCCCTCGGCGACAACTTCAACCTTCTCTCTCCTCAACAGCAAGAGCTGGTTAAGGTGCTACTGGATAACGGCCAAGAGCACCTGTTTCGCGATTGGCCAGCTCCCGGCGTCGACGATAACCACAAGAAAGCTTTCTTTGACCAGTTGACTCGGCTCGATTCGAGTTACCCTGGTGGTCTGGAATCATACATCAAAAACGCTAAACGGCTCTTGGCTGATTCTAAGGCTGGCAGAAACCCTTTCGACGGCTTTACACCTTCCGTTCCAACGGGTGAGACTTTGGCATTTGGTGATGAGAGCTACATCAAATTTGAGGAAGCAGGTGTACTTGAAGCTCGGAAAGCTGCGTTTGTTCTTGTTGCCGGTGGTCTTGGCGAGCGTTTAGGATACAGTGGGATTAAGCTTGCTCTTCCTGCAGAAAGCACTACTGGAACATGTTTTGTACAACAATACATTGAATCTATATTGGCTCTTCAAGAAGCCAGCTCACAAGGTGAATCCCAGACACAGATTCCTCTTGTTATTATGACATCTGATGACACCCATGGACGTACTTTAGAGTTATTAGAATCAAATTCTTATTTTGGTTTGCAACCCACGCAAGTAACACTTTTAAAGCAGGAAAAAGTTGCATGCTTAGAAGATAACGATGCCAGGCTTGCATTGGAACCACAAAACAAGTACAAAATTCAGACAAAACCTCATGGACATGGTGATGTGCATGCGCTTCTTTTTTCAAGTGGCATTCTGAAAGTATGGTATGAAGCTGGGTTGAAATGGGTTTTATTTTTTCAAGATACAAATGGGCTTTTATTCAAGGCAATTCCATCAGCACTGGGCGTCAGTGCTGCCAAACAGTACCATGTTAACTCTCTTGCAGTACCTCGGAAAGCAAAAGAAGCTATTGGTGGAATTACCAGACTCACTCACTCTGATGGGAGGTCTATGGTGATAAATGTGGAATACAATCAGCTAGATCCTCTTCTCAGAGCAAGTGGATACCCTAATGGTGATGTAAATTGTGAGACTGGCTACTCCCCATTTCCAGGAAATATTAACCAATTGATTTTAGAACTTGGTCCTTACATTGAAGAGCTCTCAAAAACAGGAGGTGCCATACAGGAGTTTGTTAACCCAAAATATAAGGATGCCAGCAAAACTTCATTTAAGTCCTCAACTCGACTTGAATGTATGATGCAAGACTATCCAAAAACGTTGCCCCTATCTGCCAGGGTTGGGTTCACGGTGATGGAAACATGGCTTGCTTATGCACCCGTGAAGAATAATGCTGAGGATGCTGCTAAGGTGCCGAAAGGAAATCCATACCATAGTGCAACTTCTGGAGAAATGGCCATCTATCGTGCAAATAGCATTATTCTCAAAAAGGCTGGTGTCCAAGTAGCAGATCCAGTAGTGCAGGTCTTCAATGGGCAAGAGGTTGAAGTTTGGCCTCGTATCACATGGAAGCCAAAATGGGGTCTGACTTTTAATCGGATCAAGGGCAAAGTCAGTGGAAATTGCTCCATTTCCCTAAGGTCTACTCTGGCTATTAAGGGTCCAAATATATTTATTGAAAATCTGTCCGTAGATGGGGCTCTAATCATTGACGCTGTGGATGATGCAGAGGTAAACGTGAGTGGCTCAGTTCAAAACGATGGGTGGATCCTTGAAACTATTGACTACAAAGATGCCTCGGAGCCTGAGGTGTTGAGAATCAGGGGTTTTAAATTTAACAAAATTGAGCAGCTGGAAACGAAATACTCCGAGCCTGGCAAATTTCACTTGAAGGCTTGA

Predicted protein sequences of Glyma06g12430

Limit To All Plant Sequences

>Glyma06g12430.3   sequence type=predicted peptide   gene model=Glyma06g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSLGDNFNLLSPQQQELVKVLLDNGQEHLFRDWPAPGVDDNHKKAFFDQLTRLDSSYPGGLESYIKNAKRLLADSKAGRNPFDGFTPSVPTGETLAFGDESYIKFEEAGVLEARKAAFVLVAGGLGERLGYSGIKLALPAESTTGTCFVQQYIESILALQEASSQGESQTQIPLVIMTSDDTHGRTLELLESNSYFGLQPTQVTLLKQEKVACLEDNDARLALEPQNKYKIQTKPHGHGDVHALLFSSGILKVWYEAGLKWVLFFQDTNGLLFKAIPSALGVSAAKQYHVNSLAVPRKAKEAIGGITRLTHSDGRSMVINVEYNQLDPLLRASGYPNGDVNCETGYSPFPGNINQLILELGPYIEELSKTGGAIQEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPLSARVGFTVMETWLAYAPVKNNAEDAAKVPKGNPYHSATSGEMAIYRANSIILKKAGVQVADPVVQVFNGQEVEVWPRITWKPKWGLTFNRIKGKVSGNCSISLRSTLAIKGPNIFIENLSVDGALIIDAVDDAEVNVSGSVQNDGWILETIDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA*

>Glyma06g12430.4   sequence type=predicted peptide   gene model=Glyma06g12430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSSLGDNFNLLSPQQQELVKVLLDNGQEHLFRDWPAPGVDDNHKKAFFDQLTRLDSSYPGGLESYIKNAKRLLADSKAGRNPFDGFTPSVPTGETLAFGDESYIKFEEAGVLEARKAAFVLVAGGLGERLGYSGIKLALPAESTTGTCFVQQYIESILALQEASSQGESQTQIPLVIMTSDDTHGRTLELLESNSYFGLQPTQVTLLKQEKVACLEDNDARLALEPQNKYKIQTKPHGHGDVHALLFSSGILKVWYEAGLKWVLFFQDTNGLLFKAIPSALGVSAAKQYHVNSLAVPRKAKEAIGGITRLTHSDGRSMVINVEYNQLDPLLRASGYPNGDVNCETGYSPFPGNINQLILELGPYIEELSKTGGAIQEFVNPKYKDASKTSFKSSTRLECMMQDYPKTLPLSARVGFTVMETWLAYAPVKNNAEDAAKVPKGNPYHSATSGEMAIYRANSIILKKAGVQVADPVVQVFNGQEVEVWPRITWKPKWGLTFNRIKGKVSGNCSISLRSTLAIKGPNIFIENLSVDGALIIDAVDDAEVNVSGSVQNDGWILETIDYKDASEPEVLRIRGFKFNKIEQLETKYSEPGKFHLKA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain