SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77290 | AT | Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein | chr1:29038917-29039815 FORWARD LENGTH=266 | SoyBase | E_val: 6.00E-140 | ISS |
| GO:0019338 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pentachlorophenol catabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| KOG4420 | KOG | Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) | JGI | ISS | |
| PTHR11260 | Panther | GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING | JGI | ISS | |
| PTHR11260:SF31 | Panther | OS04G0435500 PROTEIN | JGI | ISS | |
| PF00043 | PFAM | Glutathione S-transferase, C-terminal domain | JGI | ISS | |
| PF02798 | PFAM | Glutathione S-transferase, N-terminal domain | JGI | ISS | |
| UniRef100_B9S2T7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ganglioside-induced differentiation-associated protein 1, 2 gdap, putative n=1 Tax=Ricinus communis RepID=B9S2T7_RICCO | SoyBase | E_val: 1.00E-152 | ISS |
| UniRef100_I1KAF0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAF0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g12400 not represented in the dataset |
Glyma06g12400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g117800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12400.1 sequence type=CDS gene model=Glyma06g12400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAATTGTACCATCATCCATTTGATTTGGACTCCCAGAAGGTGAGACTTGCGTTGGAAGAGAAAGGCATTGATTATACATCTCACCATGCCAATCCCATAACTGGCAAGAACTTGGATTCTTCATTCTTCAACATGAATCCCGGTGGAAGACTCCCTGTTTTCCAAAATGGGTCTCACATCCTTTACAAGACTATTGATATAATCCAGTACATAGAAAGAATTGCTGTGTTCTCCTCAGGGTCTGAGAATATCAGTAGCAGTAGCAGGGAAGTGATTGAATGGATGCAGAAGATACAAGAGTGGGATCCTAAGTATTTTTCCCTTTCCCATATACCAGAGAAATACAGGATATACGTTTCCAAGTTCTTAAGGCGAGTGGTGATTGCTCGAATGTCCGAGTCCCCAGAATTAGCGGGTGCTTACCATAAGAAGTTAAAAGAAGCCTATCAGACTGAAGAGAAATTGAAAGAGGCAGCTGTATTGAGAAGGAGCAAGGAGCATTTGATTAGGCTGCTTGATGAAGCAGAGAGGCAGCTGAGTGAAACACCTTATTTAGCAGGTGAAGAGTTTACCATGGCGGATGTCATGCTCATTCCGGTGTTGGCTCGTTTAGTACTCTTGGATTTGGAAAATGAGTACATAACTGGCAGGCCCAACATTGCTGAGTATTGGGTTTTTGTTCAGCAGAGGCCTAGTTATAGGAAGGTGATTGGTAGGTATTTTGATGGTTGGAAAAAACACAAGACATTGTTGAAAACTTGGTGCTTTGTTCGTATTAGAAGTTTGCTGAAGAGGTACTAG
>Glyma06g12400.1 sequence type=predicted peptide gene model=Glyma06g12400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQLYHHPFDLDSQKVRLALEEKGIDYTSHHANPITGKNLDSSFFNMNPGGRLPVFQNGSHILYKTIDIIQYIERIAVFSSGSENISSSSREVIEWMQKIQEWDPKYFSLSHIPEKYRIYVSKFLRRVVIARMSESPELAGAYHKKLKEAYQTEEKLKEAAVLRRSKEHLIRLLDEAERQLSETPYLAGEEFTMADVMLIPVLARLVLLDLENEYITGRPNIAEYWVFVQQRPSYRKVIGRYFDGWKKHKTLLKTWCFVRIRSLLKRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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