SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77300 | AT | Annotation by Michelle Graham. TAIR10: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) | chr1:29040160-29048810 REVERSE LENGTH=1805 | SoyBase | E_val: 0 | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0010223 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary shoot formation | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0010452 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K36 methylation | SoyBase | N/A | ISS |
| GO:0016116 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid metabolic process | SoyBase | N/A | ISS |
| GO:0031062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of histone methylation | SoyBase | N/A | ISS |
| GO:0040029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic | SoyBase | N/A | ISS |
| GO:0043067 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0018024 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity | SoyBase | N/A | ISS |
| GO:0042800 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity (H3-K4 specific) | SoyBase | N/A | ISS |
| PTHR22884 | Panther | SET DOMAIN PROTEINS | JGI | ISS | |
| PTHR22884:SF123 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| PF07496 | PFAM | CW-type Zinc Finger | JGI | ISS | |
| UniRef100_B9S2T8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Huntingtin interacting protein, putative n=1 Tax=Ricinus communis RepID=B9S2T8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A4FC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A4FC related cluster n=1 Tax=unknown RepID=UPI000233A4FC | SoyBase | E_val: 0 | ISS |
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Glyma06g12391 not represented in the dataset |
Glyma06g12391 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g42405 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g117700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12391.1 sequence type=CDS gene model=Glyma06g12391 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGAGATGGGGTCGTGTGGGAGATCTGCTGCCATTGATAATCCCTCAGAAAAGTTTATTATTGAGCAGCAGCAGCATTTGTGCTTAGAGGTTCAAGAGCAGGAGGTTGTTTCTGTTGTGCAGGAGTCTTGTTTAGAGGAAGAGGCTTGCAATGTGGTGGACTCTAATGTTGAGCTCTCCACTGTGATTGATGGTTGTCTGGGAGAGGACCGTGTCTGTTCCAAACGATGTGTTGATGTTACCGAGGGGTCCAGAGAGGGTTTGGGTTTGGGTTTGGTGAGTGAATGCGAAAATGCTGATTTGTTGCCACTGGAGAAATCTGCCGAAGATGATTGCCAGAATTATTTGGGGGTTTCTTGTGGGAGCATTGAAGTTCCCTGTGTAAACAGTGGCTCAGAGGGAAGATTTCTGGATGAGGGTAACTTTGATCTGCCTTCGGGGTCCTTAACTGCAGATGATTCACAGATGTATTGTGCTCAACTGGATGAGCAGAAGGATGATGAGTCGTGGTCCTTAATTACTGATGATTCACAGAGGCATTGTGCTCAACAGGATGAGCAGAAGGATGATAAGAGCGATGTATTGCCTGCAGCAGGAGATGATTTGGCTGTCGTGGAAGGCAAAAACGATGTCACTGGTGTTCTTGCTGATGCTTTCAGTCATGTACATGATTTCAGGGATTGCGAAGTGTCTTTGGAATCGGAATCCATGGCTGACTTGTTAGTTGATTGCAACTGGCAAAGTGAGCAGGAGGAAATTATGAGAAATACTGATCCCTTGTTGAATGTAGTGGAAAAATGTGACGCTCTAATTGTGGAGGAAACTGATGCTTGCAGGCAGATATCTCCTACACTGGCTATGGAAGTGCCATCAGGGGCACCATCAGGTGCATTATGTACAGATACTGAAGTAGAGAGCACAAGTGATCAGCCATGTGATCAGAAAGATGGTGAGGAAACTGATGTTTGCAGGCAGATATCTCCTACTCTGGCTATGGAAGTGCCATCAGGGGCATTTTGGACAGATACAGAAGTAGAGAGCACAAGTGATCAGCCATGTGATCCGAAAGATGGTGAGGATCAAAATAGTACTTGTGAAGAAATCATCAACATTAATTCATGTGTAAAAATATCATCCTCTCCAGGTTGCAATGAGACTGTTGGGAGCTCACCTGTAGTTGGTTTTCCTTGTGAGCCTGCCCTGTTGGATCCAGAGTATGAAATGAAGAATGGCATGCTGCAAATAGAAGATGATGCCTGTAAATTGAAGGACTGTTCCTCAGAGGAAACTACCAACTCTACCTTTAGAAAACCATTTTCTCCAGAATCAGGTCTGCCCTCTGTTGCTTTAATTACCAACTGCTCTGCAAAGGATGTTCCTGATCAACAGTCTAAGGGTGATGATGTTTCCATTGATAATAATAATGCTGTGAACAATCAAGGGCAGATGGATAATGATGGAACAGAAGCTGTTGAAGTTGATGGTATCACTGAAGGCATACCGTTACCTTCTCAAAGGAATAGTCGAAGAACTAAATTTGGCCGTAAGACACAAACCAAAAAGGCTTCAAGAAAATGCAAGAACAAAACCAAGGTTACACATCCAAATGGGGGTATGAAGCTAAACTTAGAGGCTGCTAGAAAGAAAAGAAGTTGTTTCTCCAAACCAGCTCGTTCTTCTATCTGGGGATTGATTGGAAATATTGAACAGTTTTTTGAGCAAGATAATGAGCTTGGAGATGGTGAAGCTGTGTGCCAAGAATTGGGGAAGGCTAGAAGCAAGCCTCAAAGTGGGAAAGCGGTTAAGAATGGTGCAAGTACTACCTCATTGGGTTCAGTACAGAAGCATTCTGTTTCAACTACTCGTGTTCGTCTGAAGATCAAATTTGGGAAAGAAGTTGATTTAAGTTGCTCAAATGTCTTGATTCCAGAGTCTGTTGATGGCTTGGCTTCTGCTTCCTATTTGGGGTCTGGTTCAGGTTCTCAGAAAGTAGCTGGCAATGCTGATGATAAAATTTCTGAAGTGGTGGCTTTGGGCCATTCAGAATCTTTCAATAATGACCTGGACAAGGATGGTTTTGTTCTAAATGAACAAGTTGCAAATAACCCCTTAGAAACCACTGAAATAACAGAGAAGTCATATGGGGATGCAGAGGAACCTTGTCTTGCAGTTCCTCCAGAGAAGGTGGTTGAAGCATTGATTGAACCTATCAATAACAAGGGTATGGATCCTGGAACCTCACCTGATTCTGAAGTTATCAATTCAATTCCCGAAGTCCAGGCTGGAGAAAAACATCAAGAAGATGCACATCATGCTGTTTTAGGTTCTTCTAAAGAATTAAATTCTAAATTGGATGTTACCATCAGTAAGAGAGGGAAGAACAAAGAGAAAGTTATTTGTTCAAGTAATTGTATCACTGAAGATGGATCACAAGGTCCACATAAGAATAGTAGAGCTAAGCATTCAAAGAATCACAGACGTAAGAAAAATTGCAGGGATGTGGTCAGCTCTTTGGAATTGCCCACTGATATAAGCAAATCTTTGAGCAGTAAAGAATTGTCCCCAGAATCATTGCCTCTTTCTGTAGAGACTGAACTTGGAGGCTCCACTGAGGCTTTGAAAGTTAAAAATCATACGGACGTTAAGACAAGTGACAAACCATCTGTTGACCATGGATTTTCAGATTCCCTGGTTGCTGAGAATATGCTGTCATCTGCAAGACCTTTGGAGCGTAAACTACCTAAAAGTCTTAGAGCTAGTAAAGTTAGCAAGACCAAATCTAAAGCTTCTGACTCAACTGGCAGGAAAAAGACTACTGCTGGTATACGCAAGGAGAAACAGATAAAGGCAATTAATAAGAGCAAAGTCAAGGGAAAAGGTGTTTCTCTTAAAGTTACATGTGAAGTGGAAGATTGCCTGCATCCAGAAGAAAATGCTGGAAATCATAAGCTGGATGCTGTTGGAAAAATTATTGCTGATGACAACAGAGTATCGGTCAATTTATCTAATTTGGACATGCTGTCTGGTGTTGGTTATGGGGAGCAACTTCTATCACCCCGTAATGCATGGGTTCGTTGTGATGATTGTCACAAGTGGCGGCGAATTCCAGCTGTGCTTGCAGACCGAATTGATGAAACTAACTGCACCTGGACATGTAAGGACAGCAGTGATAAAGCCTTTGCTGATTGTGCTATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCGGAGTTGGGATTATCAGATGCCTCGGGTGAAGAAGATGCATATGAAGGTTCCAAAAATTTTAAGGAATTAGAATATCGGCCTCCGTTAGTTTCCCAGGAGTCAACTTTTACCCATATTTTGACCAATGAATTTCTGCATCGTAGCCATAAAACTCAGACTATTGATGAGATAATGGTCTGTCATTGCAAGCCATCTCAAGAAGGAAAGTTGGGCTGTGGGGATGAATGTCTAAATCGGATTCTTAATATTGAATGTGTGCAAGGAACCTGCCCATGCGGGGACCGTTGTTCCAACCAGCAGTTCCAAAAACACAAGTATGCTAGCCTGAAGTGGTTTAAATGTGGGAAAAAGGGTTATGGACTGAAGGCAATTGAGAATGTAGCTCAAGGCCAGTTTCTTATTGAATACGTTGGAGAGGTACTTGATATGCAAGCATACGAGGCACGGCAAAGAGAGTATGCTTTGAAGGGTCATCGGCATTTCTATTTTATGACCTTGAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGAAGGATGAAGAATTGACCTTCGATTACAACTATGTGAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTAACTGTCGAGGTTATATAGGTGGTGGTGATCCACTTAATGCTGAACTGATAGTTCAAAGTGATTCAGAAGAAGAATTTCCAGAACCTGTCATGCTCACCAAAGATGGTGAAATTGAAGATTCTGTACCTACACCCGAGTATTTTAATAATGTTGATACACAATCTGCTAAACATATGTTGAAAGACAGGGATATATTGGACAATTCTACAACTGCTATAGATTCGGATGGTTCTCTAGAGAAAGAGCGTTCTATGAACCCTGCCTCTGCTGTTTCTCTGTTGCACAGCTCAGCAGAAATGGAGGATTCAAAGGGTAAATTACAATCTTCTGTTCAAGTTGAAGAAATTTCTCAACAAATGGAGGATGTAACAAGCAAACCCATGCCTGCTGTACACCAAGGATATGAAAAGGAATCAGAATTTGCAGACAAAACTTCTTCCATTCAAAGATTAGACACTACTTCTCCCCTTACAACTGTCAGCAAAATGTTACCGAATTCTGCTGGTAGTAACAGGGAGTCAAAGTCTGAAATAATTGGAGGCAGGAAGACTCCTAAGTTAAAAGGTTCTGTTAAAAAGGGAAAGGTTCATGCTAATCCTCCAAATGGCCTTAAAACTGAGGTGACAGCCAATCGATTACAGGTGCCATCAATAAAACACAAAAAAGTAGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGTGGAATAAGCAAAAGAAAAGATGCCACCAAAGGGTACTTGAAGCTTTTGTTTCTCACTGTGGCATCAGGAGATAGAATTAATGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTGCAGATGTTACATAACATTATGAAGCAGTACAGGCATGACTTCAAAAAAATTCCAATACTACGAAAGCTTCTTAAGGTCTTGGAGTTCCTAGAAGCAGGCAAGATTTTGACATATGAACATATTAATGGTGGTCCTCCTTGTCGTGGAATGGAGAGCTTTAGAGAGTCAATGCTTTCTCTGACAGAGCATGAAGACAAACAGGTCCATCAAATTGCTCGAAACTTCCGAGACAGATGGTTTCCCAGACATGCCAGAAAACATGGCTATATGGACAGGGATGATAACAGAGTGGAATCTCACAGAAGTTTCAAGTGTAACAGATTTTCAGCATCACAGAGTTATAGGCATGAACAGGATTTAAAGACTACAGAAGCAAGTGATTGTAGTCAGCAGTCGATGCTTGTGACAACTCCAGTAGATGCTGAAGCCCGGGAAGGCTTTCCTGTGCAGTCTCTAGATGGGGTTGAAACCAAAACAGCTGAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCCGAAACAAACTCGCATTCTGATGTCGTTATGAGCTCTATTGGTGAAAGCCAGAACATTCATGAGGATGTTCCACCAGGGTTTTCGTGTCCAGTAGGTTCATTAAATGCTTCCCTAAACTCTGGCAATCTTGCCTTGCAAAATGCAAGCCGTTCTGGATGTCCCTCTGATATAATTATTGGTCATCCAAAAGAGAAATTTAACTCTTGCTTGGCTGTCTCATTTGGAATGCCATGGTCTGTTGCCCAGCAATATGGAACTCCTCATGCTGAATTTCCAGAGTGTTGGGTCACTGCACCTGGCATGCCTTTCAACCCATTTCCTCCACTACCCCCGTATCCACGGGACAACAAAGATTGTCAACCTTCTAATACTAATGCTATGATAATTGATCAGCCTGCTGAAGTTGAGCAGGGGGATACCAGCGGTATGGTTAATTGTCGCTCTGATGATATGATTCCCAGCACAACTGGTGTTAACCCTGAAGACTCTAACCTTCTGTTTGAGGACAATAAACACATAAGTAAACGATTGAAGGGTGACTCAAATGATTTGGGAACGAGGTACTTTAGACAGCAGAAAATACACCGACCATGGTTCAAGAGGAATGCATGGAAATGTGATGAGAACAACTCTAGTGGTGATATGTGCAGTATAGATGTAGGAGATGTACCAAAAGAGTCAAAAGTTACTTGTGACGCGGAGGATGCAATCTGTAGAGAGGAGTAA
>Glyma06g12391.1 sequence type=predicted peptide gene model=Glyma06g12391 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVEMGSCGRSAAIDNPSEKFIIEQQQHLCLEVQEQEVVSVVQESCLEEEACNVVDSNVELSTVIDGCLGEDRVCSKRCVDVTEGSREGLGLGLVSECENADLLPLEKSAEDDCQNYLGVSCGSIEVPCVNSGSEGRFLDEGNFDLPSGSLTADDSQMYCAQLDEQKDDESWSLITDDSQRHCAQQDEQKDDKSDVLPAAGDDLAVVEGKNDVTGVLADAFSHVHDFRDCEVSLESESMADLLVDCNWQSEQEEIMRNTDPLLNVVEKCDALIVEETDACRQISPTLAMEVPSGAPSGALCTDTEVESTSDQPCDQKDGEETDVCRQISPTLAMEVPSGAFWTDTEVESTSDQPCDPKDGEDQNSTCEEIININSCVKISSSPGCNETVGSSPVVGFPCEPALLDPEYEMKNGMLQIEDDACKLKDCSSEETTNSTFRKPFSPESGLPSVALITNCSAKDVPDQQSKGDDVSIDNNNAVNNQGQMDNDGTEAVEVDGITEGIPLPSQRNSRRTKFGRKTQTKKASRKCKNKTKVTHPNGGMKLNLEAARKKRSCFSKPARSSIWGLIGNIEQFFEQDNELGDGEAVCQELGKARSKPQSGKAVKNGASTTSLGSVQKHSVSTTRVRLKIKFGKEVDLSCSNVLIPESVDGLASASYLGSGSGSQKVAGNADDKISEVVALGHSESFNNDLDKDGFVLNEQVANNPLETTEITEKSYGDAEEPCLAVPPEKVVEALIEPINNKGMDPGTSPDSEVINSIPEVQAGEKHQEDAHHAVLGSSKELNSKLDVTISKRGKNKEKVICSSNCITEDGSQGPHKNSRAKHSKNHRRKKNCRDVVSSLELPTDISKSLSSKELSPESLPLSVETELGGSTEALKVKNHTDVKTSDKPSVDHGFSDSLVAENMLSSARPLERKLPKSLRASKVSKTKSKASDSTGRKKTTAGIRKEKQIKAINKSKVKGKGVSLKVTCEVEDCLHPEENAGNHKLDAVGKIIADDNRVSVNLSNLDMLSGVGYGEQLLSPRNAWVRCDDCHKWRRIPAVLADRIDETNCTWTCKDSSDKAFADCAIPQEKSNAEINAELGLSDASGEEDAYEGSKNFKELEYRPPLVSQESTFTHILTNEFLHRSHKTQTIDEIMVCHCKPSQEGKLGCGDECLNRILNIECVQGTCPCGDRCSNQQFQKHKYASLKWFKCGKKGYGLKAIENVAQGQFLIEYVGEVLDMQAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKDEELTFDYNYVRVFGAAAKKCYCGSPNCRGYIGGGDPLNAELIVQSDSEEEFPEPVMLTKDGEIEDSVPTPEYFNNVDTQSAKHMLKDRDILDNSTTAIDSDGSLEKERSMNPASAVSLLHSSAEMEDSKGKLQSSVQVEEISQQMEDVTSKPMPAVHQGYEKESEFADKTSSIQRLDTTSPLTTVSKMLPNSAGSNRESKSEIIGGRKTPKLKGSVKKGKVHANPPNGLKTEVTANRLQVPSIKHKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLFLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRHDFKKIPILRKLLKVLEFLEAGKILTYEHINGGPPCRGMESFRESMLSLTEHEDKQVHQIARNFRDRWFPRHARKHGYMDRDDNRVESHRSFKCNRFSASQSYRHEQDLKTTEASDCSQQSMLVTTPVDAEAREGFPVQSLDGVETKTAEKRKRKSRWDQPAETNSHSDVVMSSIGESQNIHEDVPPGFSCPVGSLNASLNSGNLALQNASRSGCPSDIIIGHPKEKFNSCLAVSFGMPWSVAQQYGTPHAEFPECWVTAPGMPFNPFPPLPPYPRDNKDCQPSNTNAMIIDQPAEVEQGDTSGMVNCRSDDMIPSTTGVNPEDSNLLFEDNKHISKRLKGDSNDLGTRYFRQQKIHRPWFKRNAWKCDENNSSGDMCSIDVGDVPKESKVTCDAEDAICREE*
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