SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21650 | AT | Annotation by Michelle Graham. TAIR10: Preprotein translocase SecA family protein | chr1:7592891-7600590 REVERSE LENGTH=1058 | SoyBase | E_val: 0 | ISS |
| GO:0006605 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0017038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF01043 | PFAM | SecA preprotein cross-linking domain | JGI | ISS | |
| PF07516 | PFAM | SecA Wing and Scaffold domain | JGI | ISS | |
| PF07517 | PFAM | SecA DEAD-like domain | JGI | ISS | |
| UniRef100_I1KAE1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein translocase subunit SecA 4 n=1 Tax=Glycine max RepID=I1KAE1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339314 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339314 related cluster n=1 Tax=unknown RepID=UPI0002339314 | SoyBase | E_val: 0 | ISS |
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Glyma06g12320 not represented in the dataset |
Glyma06g12320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g116900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12320.2 sequence type=CDS gene model=Glyma06g12320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGCGCTAACCCGCTGAAGTTGGAAGCACAAACACACACCTTTATGGCTGCGCTCTCATATTCACCTTTCTTCGCCCTTCACAGAATCACTTCCACTTCCACTTCCGCCTGCGCCAACGCCAACGCCTTCTTCATTCGGCCTCGTCCTTCTGTTCCTCCTCGACCTCGCCTGCGACGACGTCGTTGCGCACCCGTTCTCGTCGCTGCAGCGTCTGTTAAGGAAAATCTCGGCCGCGTTCAGAAGAGTTTAGCCGACTTCACGAGCTTAAACTACTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCCGTCAATGCCTTCGAGCCGCAAATTCAGACGCTCTCCGATGAACAGCTGGCCGCGAAAACCGCCGAATTTCGCCGCCGGCTCGCGCGAGGGGCCACCATTGCCGATATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAGCTTGGAATGCGCCATTTCGATGTTCAGATTATTGGTGGAGCAGTGTTGCATGATGGTTCCATCGCTGAGATGAAAACGGGGGAAGGTAAAACCTTGGTTTCCACGCTAGCGGCTTATCTTAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGAGAGGAATGAATTCTGAAGAACGGAGACTCAACTACGGACGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGATAATCTTGCTGGAAATAGTGAACAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGCTAATCAGTGGTGAGGCTAGTAAAGATGCCGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGATCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTTAGAGATGGGAAGGCTTTGATTATCAATGAGCTGACTGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTAGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAGTGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTAAATGCTAGACCCAAGTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGCGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGAGAGGATCCAAATGTTGAACTTGCAGATGAGGCTATTTCACAGAAGGTGCTTCCAAAGGTAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAACCTTAATGGCTAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCTGTTGAAATGAGCCTTTCATATAGTTTGGAGGGGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCAACTGTAGCCCTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTACGTGGCAGAGCAGGAAGACAGGGGGATCCAGGATCAACACGATTTATGGTCAGTTTGCAGGATGAGATGTTTCAGAAATTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAATGACGAGGATCTGCCAATTGAGGGTGATGCAATTGTAAAGCAGCTTTTGGCACTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACATATATTCCAGTACATGCAAGCGGTGGTGGATGAGATTGTCTTCAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTTGTGACTGTTGGTGGAAAGTTGTTGCGTGAATCTTTAGGAGGAATTAGTGATGACACTTTGCTAAATTCACTTGGGCTAGTGAATGATTTGAGTTCAGTTGATATCGTCAACTTTTCCCTTCCGAATTTGCCAGCACCTCCAAATGCCTTCAGGGGAATTCGCAGGAAGAGTTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGGGAATGGGAAGTACCAAACAACTTCTAATCTTCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGATTTTTTATCTCAATGCTGAGTGCAACTAGAAGGTTAACTGTAGAAGCACTGTTGCGGTATTGGACATCTCCAATGGAATCCCAAGAACTATTTTTATCATGA
>Glyma06g12320.2 sequence type=predicted peptide gene model=Glyma06g12320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCANPLKLEAQTHTFMAALSYSPFFALHRITSTSTSACANANAFFIRPRPSVPPRPRLRRRRCAPVLVAAASVKENLGRVQKSLADFTSLNYWVVRDYYRLVNSVNAFEPQIQTLSDEQLAAKTAEFRRRLARGATIADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRLNYGRDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELKDNSVELTEEGIDLAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEIVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELADEAISQKVLPKVKVGSSSMALLAKTTLMAKYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLEGLEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLKHPRSWGLSKLLKEFVTVGGKLLRESLGGISDDTLLNSLGLVNDLSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTSPMESQELFLS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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