Glyma06g12320 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g12320

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9492104
stop:	9507824
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21650	AT	Annotation by Michelle Graham. TAIR10: Preprotein translocase SecA family protein \| chr1:7592891-7600590 REVERSE LENGTH=1058	SoyBase	E_val: 0	ISS
GO:0006605	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0017038	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF01043	PFAM	SecA preprotein cross-linking domain	JGI		ISS
PF07516	PFAM	SecA Wing and Scaffold domain	JGI		ISS
PF07517	PFAM	SecA DEAD-like domain	JGI		ISS
UniRef100_I1KAE1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein translocase subunit SecA 4 n=1 Tax=Glycine max RepID=I1KAE1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339314	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339314 related cluster n=1 Tax=unknown RepID=UPI0002339314	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g12320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g116900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12320

Limit To All Plant Sequences

>Glyma06g12320.2   sequence type=CDS   gene model=Glyma06g12320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCGCTAACCCGCTGAAGTTGGAAGCACAAACACACACCTTTATGGCTGCGCTCTCATATTCACCTTTCTTCGCCCTTCACAGAATCACTTCCACTTCCACTTCCGCCTGCGCCAACGCCAACGCCTTCTTCATTCGGCCTCGTCCTTCTGTTCCTCCTCGACCTCGCCTGCGACGACGTCGTTGCGCACCCGTTCTCGTCGCTGCAGCGTCTGTTAAGGAAAATCTCGGCCGCGTTCAGAAGAGTTTAGCCGACTTCACGAGCTTAAACTACTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCCGTCAATGCCTTCGAGCCGCAAATTCAGACGCTCTCCGATGAACAGCTGGCCGCGAAAACCGCCGAATTTCGCCGCCGGCTCGCGCGAGGGGCCACCATTGCCGATATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAGCTTGGAATGCGCCATTTCGATGTTCAGATTATTGGTGGAGCAGTGTTGCATGATGGTTCCATCGCTGAGATGAAAACGGGGGAAGGTAAAACCTTGGTTTCCACGCTAGCGGCTTATCTTAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCTGTTGGCCTTATTCAGAGAGGAATGAATTCTGAAGAACGGAGACTCAACTACGGACGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGAGATAATCTTGCTGGAAATAGTGAACAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGCTAATCAGTGGTGAGGCTAGTAAAGATGCCGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGATCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTATAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTTAGAGATGGGAAGGCTTTGATTATCAATGAGCTGACTGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTAGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGAACAACTAGTGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTAAATGCTAGACCCAAGTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGCGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGAGAGGATCCAAATGTTGAACTTGCAGATGAGGCTATTTCACAGAAGGTGCTTCCAAAGGTAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAACCTTAATGGCTAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCTGTTGAAATGAGCCTTTCATATAGTTTGGAGGGGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCAACTGTAGCCCTTGCCTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTACGTGGCAGAGCAGGAAGACAGGGGGATCCAGGATCAACACGATTTATGGTCAGTTTGCAGGATGAGATGTTTCAGAAATTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAATGACGAGGATCTGCCAATTGAGGGTGATGCAATTGTAAAGCAGCTTTTGGCACTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACATATATTCCAGTACATGCAAGCGGTGGTGGATGAGATTGTCTTCAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTTGTGACTGTTGGTGGAAAGTTGTTGCGTGAATCTTTAGGAGGAATTAGTGATGACACTTTGCTAAATTCACTTGGGCTAGTGAATGATTTGAGTTCAGTTGATATCGTCAACTTTTCCCTTCCGAATTTGCCAGCACCTCCAAATGCCTTCAGGGGAATTCGCAGGAAGAGTTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGGGAATGGGAAGTACCAAACAACTTCTAATCTTCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGATTTTTTATCTCAATGCTGAGTGCAACTAGAAGGTTAACTGTAGAAGCACTGTTGCGGTATTGGACATCTCCAATGGAATCCCAAGAACTATTTTTATCATGA

Predicted protein sequences of Glyma06g12320

Limit To All Plant Sequences

>Glyma06g12320.2   sequence type=predicted peptide   gene model=Glyma06g12320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCANPLKLEAQTHTFMAALSYSPFFALHRITSTSTSACANANAFFIRPRPSVPPRPRLRRRRCAPVLVAAASVKENLGRVQKSLADFTSLNYWVVRDYYRLVNSVNAFEPQIQTLSDEQLAAKTAEFRRRLARGATIADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRLNYGRDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELKDNSVELTEEGIDLAEMALETNDLWDENDPWARFVMNAIKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEIVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELADEAISQKVLPKVKVGSSSMALLAKTTLMAKYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLEGLEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLKHPRSWGLSKLLKEFVTVGGKLLRESLGGISDDTLLNSLGLVNDLSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTSPMESQELFLS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain