SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21651 | AT | Annotation by Michelle Graham. TAIR10: zinc ion binding | chr1:7601061-7604152 REVERSE LENGTH=811 | SoyBase | E_val: 0 | ISS |
| KOG0279 | KOG | G protein beta subunit-like protein | JGI | ISS | |
| KOG0315 | KOG | G-protein beta subunit-like protein (contains WD40 repeats) | JGI | ISS | |
| PTHR22844 | Panther | F-BOX AND WD40 DOMAIN PROTEIN | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_B9S2U6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein translocase subunit SecA 2 n=1 Tax=Ricinus communis RepID=B9S2U6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339314 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339314 related cluster n=1 Tax=unknown RepID=UPI0002339314 | SoyBase | E_val: 0 | ISS |
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Glyma06g12310 not represented in the dataset |
Glyma06g12310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g42470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g116800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12310.2 sequence type=transcript gene model=Glyma06g12310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAAACGACGCCGTTTGAGAGTCATTTGTTTGGGGTGTTGCCTCGACCTTAGTTACTTGCTCTGGTTATCACCGCCGGCGATGGAGCCGCCGGAGTGCCCGGTATGTCTTCAATCCTTCGACGAGCGCGACGCAATTCCTCGTGTCTTATCATGTGGACACTCCGTCTGCGAAGCTTGCCTCGCGGAGCTTCCGCAGCGGTACCAGGACACTATTCGGTGCCCCGCCTGCACCCAACTCGTGAAGTACCCTTCTCAACAAGGCCCTTCCTCTCTCCCCAAAAACATTGACCTCCTCAGACTCTCCCTCCAACACTCCCCTTCCCCTTCCTCTTCCTCTTCCTCTGATCATTCCCAGATACCGAATCAACGCTCCACAACCAATTCTTGTTACTATCACCCTCCCTTCTCGTCCCATGAGCTTTATGTTACATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTTAACGGACGATCATTGTATTGGCTGGTTCAGTTCGACCAAGGGTAGGGGTTGCTTCGGAGTTAACCGTAGTGTAAGTCTTGCTCCCATTGTTTGTTTCCCTCCTCGGGATCGTTCCAAGTTTAGGTTTAGTTATGTCGCATGGGTGATTAAGTGTTTGGAGGGGATGAACGAGGGTGCGAAGGAGGAGTTGGCGTTGATTCTAGAAGCTTCCGTGAGGCAGGGGAGGATGTGTAGGGTTTATGGTTTGTGGAGTGAAGGGGTGGAAGGGCCTCTGTATATGGTGTGTGAGAGGCAAAGATGTAATTTATTGGACAAGTTTGGTGAATTGGGAAATGGGTTTCTTGCTGTGAGTGAGGGTGGTTTGGAGTTGGATAAAGGTGGGATTTTTAGTTTTTTAATGATTGGGAAGGGTATATGTGAAGCTGTGCTTGCTTTGCATTTGGAAGGGTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGGGATTTGTGTTGATTTGAATGAGGCATTGATGCTGGCAAGGAAGTTTGTGAATGCTGTTTCCGTTGAACACAAAGAAGAAGCAATGTGTAAGGGTTGCTTGGAAAATGAGGTTTTTGCAAGCCCTGAGGTTTTGTATGAGTTGTTGCACAAGAGGGGCACTGCTCCCGATAGTGGGCATTCGAGATATCCAATTGGGTATGGCTCGGATGTATGGTCATTGGCTTGTGTACTGCTGCGGCTTCTTATTGGAAATGTGCTGGCTTGGAATACCTTGGAAATGAAGGAAGAGAATGACGGTGATAGCTCTGCTAGTTATGCATGCTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAATATCTGTCACTGAGGCAGATTCTTTGTAAATGTTTGGATGTCAATCCAGGAAACCGGCCAGATGTGGTGGATGTAAGGAAATGCATTCAGAATATGTTAGTCAAACCGCAATTTGATTTTCTGGGCAACTTGGAGGTCACGATAAGTAGGGACTACACAGGAATCTGCTTGGTTCTAGGGGAGTTGTGTTTGTTGCCTAAGCAAAGTTCTAATGAACTGATTGAACATGAGTTGTGGGAGAAAGAAATTGGTGGTCAACCAAATGTTGTTCAAGATGGCAAAGGCAAATCTGATGAGGACTTTGCTGCTGGCTTACCTAAGGGAATGACTGAACTCAAAGATCTGCAGGGCCATCTTGATTGTATCAGTGGATTGGCTGTTGGGGGGAGGTATCTATTGAGCTCCTCATTTGATAAAACTGTTCATGTATGGTCTTTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATCTGGGGAATTGCTGCCCCTCTTAGGCAAGATCCCTTAAGGAAATGGTATGAGAAGAAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGTTGTTTCCAAAAATCATTCTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGATCTGTAGTTTCCACACTTGCTGTATGCGATGAGGTTCTTTACAGCGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTTAATGACCACAGTCCACTGACAGTTTTGGGGGAAGATCCGCCTGCAGAGATGAAGTCTATCTTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCTGCACATGAGAATGGATGCATAAAGGTCTGGAGAAACGATGTGTTCATGAATTCCAAAACATTGCATAAAGGGGCCATTTTTGCTATGAGTATGCAGGGAAAATGCCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGATGAGTTTGAACTGGATGTCAAAGCATATGGATCCATTCCTTGCAGTGCTGTTGCAACAGCTATATTATGCAGCCAAGGAAAACTGTACGTTGGATATGCTGACAAGTCTATCAAGGTTTATCTGTAAACAGTAAGAGTTTATCAGGTGCATCTGTTCAACTCATGGTTTGATTGCTCAAGTTGCAGCCATTTTGATTTTTCTCAAATTATGCATCATCCATGTGATGCTCGGTTCTGGAGTGCTTGTTAATTCACATTTTCGACACAAATGCAGATGATATGATATGATTCAAGTGATACTTAAAAGGTGTTATGCACATATTTTAAACTATTTATTTTTGGGTTTTGATTCTTTAGGTTTGTATATAACTTGAAACTATTGCAGTGAGCTTAATGTAATCTATACCATAGTCTATATCATAGTAAATCTGTTCAGATTCAGGACACATGTCAAGTTTTAGTGCAAAATTTCCCGCCAGTTCTACTTTCTCTCTTTCTATTTTTGCTACATTATCACGATTCCGTTGTGTTGGTTTATATCCAGT
>Glyma06g12310.1 sequence type=CDS gene model=Glyma06g12310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCGCCGGAGTGCCCGGTATGTCTTCAATCCTTCGACGAGCGCGACGCAATTCCTCGTGTCTTATCATGTGGACACTCCGTCTGCGAAGCTTGCCTCGCGGAGCTTCCGCAGCGGTACCAGGACACTATTCGGTGCCCCGCCTGCACCCAACTCGTGAAGTACCCTTCTCAACAAGGCCCTTCCTCTCTCCCCAAAAACATTGACCTCCTCAGACTCTCCCTCCAACACTCCCCTTCCCCTTCCTCTTCCTCTTCCTCTGATCATTCCCAGATACCGAATCAACGCTCCACAACCAATTCTTGTTACTATCACCCTCCCTTCTCGTCCCATGAGCTTTATGTTACATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTTAACGGACGATCATTGTATTGGCTGGTTCAGTTCGACCAAGGGTAGGGGTTGCTTCGGAGTTAACCGTAGTGTAAGTCTTGCTCCCATTGTTTGTTTCCCTCCTCGGGATCGTTCCAAGTTTAGGTTTAGTTATGTCGCATGGGTGATTAAGTGTTTGGAGGGGATGAACGAGGGTGCGAAGGAGGAGTTGGCGTTGATTCTAGAAGCTTCCGTGAGGCAGGGGAGGATGTGTAGGGTTTATGGTTTGTGGAGTGAAGGGGTGGAAGGGCCTCTGTATATGGTGTGTGAGAGGCAAAGATGTAATTTATTGGACAAGTTTGGTGAATTGGGAAATGGGTTTCTTGCTGTGAGTGAGGGTGGTTTGGAGTTGGATAAAGGTGGGATTTTTAGTTTTTTAATGATTGGGAAGGGTATATGTGAAGCTGTGCTTGCTTTGCATTTGGAAGGGTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGGGATTTGTGTTGATTTGAATGAGGCATTGATGCTGGCAAGGAAGTTTGTGAATGCTGTTTCCGTTGAACACAAAGAAGAAGCAATGTGTAAGGGTTGCTTGGAAAATGAGGTTTTTGCAAGCCCTGAGGTTTTGTATGAGTTGTTGCACAAGAGGGGCACTGCTCCCGATAGTGGGCATTCGAGATATCCAATTGGGTATGGCTCGGATGTATGGTCATTGGCTTGTGTACTGCTGCGGCTTCTTATTGGAAATGTGCTGGCTTGGAATACCTTGGAAATGAAGGAAGAGAATGACGGTGATAGCTCTGCTAGTTATGCATGCTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAATATCTGTCACTGAGGCAGATTCTTTGTAAATGTTTGGATGTCAATCCAGGAAACCGGCCAGATGTGGTGGATGTAAGGAAATGCATTCAGAATATGTTAGTCAAACCGCAATTTGATTTTCTGGGCAACTTGGAGGTCACGATAAGTAGGGACTACACAGGAATCTGCTTGGTTCTAGGGGAGTTGTGTTTGTTGCCTAAGCAAAGTTCTAATGAACTGATTGAACATGAGTTGTGGGAGAAAGAAATTGGTGGTCAACCAAATGTTGTTCAAGATGGCAAAGGCAAATCTGATGAGGACTTTGCTGCTGGCTTACCTAAGGGAATGACTGAACTCAAAGATCTGCAGGGCCATCTTGATTGTATCAGTGGATTGGCTGTTGGGGGGAGGTATCTATTGAGCTCCTCATTTGATAAAACTGTTCATGTATGGTCTTTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATCTGGGGAATTGCTGCCCCTCTTAGGCAAGATCCCTTAAGGAAATGGTATGAGAAGAAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGTTGTTTCCAAAAATCATTCTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGATCTGTAGTTTCCACACTTGCTGTATGCGATGAGGTTCTTTACAGCGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTTAATGACCACAGTCCACTGACAGTTTTGGGGGAAGATCCGCCTGCAGAGATGAAGTCTATCTTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCTGCACATGAGAATGGATGCATAAAGGTCTGGAGAAACGATGTGTTCATGAATTCCAAAACATTGCATAAAGGGGCCATTTTTGCTATGAGTATGCAGGGAAAATGCCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGATGAGTTTGAACTGGATGTCAAAGCATATGGATCCATTCCTTGCAGTGCTGTTGCAACAGCTATATTATGCAGCCAAGGAAAACTGTACGTTGGATATGCTGACAAGTCTATCAAGTTATTATTGATTTGA >Glyma06g12310.2 sequence type=CDS gene model=Glyma06g12310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCGCCGGAGTGCCCGGTATGTCTTCAATCCTTCGACGAGCGCGACGCAATTCCTCGTGTCTTATCATGTGGACACTCCGTCTGCGAAGCTTGCCTCGCGGAGCTTCCGCAGCGGTACCAGGACACTATTCGGTGCCCCGCCTGCACCCAACTCGTGAAGTACCCTTCTCAACAAGGCCCTTCCTCTCTCCCCAAAAACATTGACCTCCTCAGACTCTCCCTCCAACACTCCCCTTCCCCTTCCTCTTCCTCTTCCTCTGATCATTCCCAGATACCGAATCAACGCTCCACAACCAATTCTTGTTACTATCACCCTCCCTTCTCGTCCCATGAGCTTTATGTTACATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTTAACGGACGATCATTGTATTGGCTGGTTCAGTTCGACCAAGGGTAGGGGTTGCTTCGGAGTTAACCGTAGTGTAAGTCTTGCTCCCATTGTTTGTTTCCCTCCTCGGGATCGTTCCAAGTTTAGGTTTAGTTATGTCGCATGGGTGATTAAGTGTTTGGAGGGGATGAACGAGGGTGCGAAGGAGGAGTTGGCGTTGATTCTAGAAGCTTCCGTGAGGCAGGGGAGGATGTGTAGGGTTTATGGTTTGTGGAGTGAAGGGGTGGAAGGGCCTCTGTATATGGTGTGTGAGAGGCAAAGATGTAATTTATTGGACAAGTTTGGTGAATTGGGAAATGGGTTTCTTGCTGTGAGTGAGGGTGGTTTGGAGTTGGATAAAGGTGGGATTTTTAGTTTTTTAATGATTGGGAAGGGTATATGTGAAGCTGTGCTTGCTTTGCATTTGGAAGGGTTGGTTGCTGGCTGTTTGGGGCTTTCTTGTTTCTCTTTTGATGAGCTTGGTGGGATTTGTGTTGATTTGAATGAGGCATTGATGCTGGCAAGGAAGTTTGTGAATGCTGTTTCCGTTGAACACAAAGAAGAAGCAATGTGTAAGGGTTGCTTGGAAAATGAGGTTTTTGCAAGCCCTGAGGTTTTGTATGAGTTGTTGCACAAGAGGGGCACTGCTCCCGATAGTGGGCATTCGAGATATCCAATTGGGTATGGCTCGGATGTATGGTCATTGGCTTGTGTACTGCTGCGGCTTCTTATTGGAAATGTGCTGGCTTGGAATACCTTGGAAATGAAGGAAGAGAATGACGGTGATAGCTCTGCTAGTTATGCATGCTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAATATCTGTCACTGAGGCAGATTCTTTGTAAATGTTTGGATGTCAATCCAGGAAACCGGCCAGATGTGGTGGATGTAAGGAAATGCATTCAGAATATGTTAGTCAAACCGCAATTTGATTTTCTGGGCAACTTGGAGGTCACGATAAGTAGGGACTACACAGGAATCTGCTTGGTTCTAGGGGAGTTGTGTTTGTTGCCTAAGCAAAGTTCTAATGAACTGATTGAACATGAGTTGTGGGAGAAAGAAATTGGTGGTCAACCAAATGTTGTTCAAGATGGCAAAGGCAAATCTGATGAGGACTTTGCTGCTGGCTTACCTAAGGGAATGACTGAACTCAAAGATCTGCAGGGCCATCTTGATTGTATCAGTGGATTGGCTGTTGGGGGGAGGTATCTATTGAGCTCCTCATTTGATAAAACTGTTCATGTATGGTCTTTGCAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATCTGGGGAATTGCTGCCCCTCTTAGGCAAGATCCCTTAAGGAAATGGTATGAGAAGAAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGTTGTTTCCAAAAATCATTCTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGATCTGTAGTTTCCACACTTGCTGTATGCGATGAGGTTCTTTACAGCGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTTAATGACCACAGTCCACTGACAGTTTTGGGGGAAGATCCGCCTGCAGAGATGAAGTCTATCTTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCTGCACATGAGAATGGATGCATAAAGGTCTGGAGAAACGATGTGTTCATGAATTCCAAAACATTGCATAAAGGGGCCATTTTTGCTATGAGTATGCAGGGAAAATGCCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGATGAGTTTGAACTGGATGTCAAAGCATATGGATCCATTCCTTGCAGTGCTGTTGCAACAGCTATATTATGCAGCCAAGGAAAACTGTACGTTGGATATGCTGACAAGTCTATCAAGGTTTATCTGTAA
>Glyma06g12310.1 sequence type=predicted peptide gene model=Glyma06g12310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPPECPVCLQSFDERDAIPRVLSCGHSVCEACLAELPQRYQDTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQHSPSPSSSSSSDHSQIPNQRSTTNSCYYHPPFSSHELYVTWKDWILPHDAVLTDDHCIGWFSSTKGRGCFGVNRSVSLAPIVCFPPRDRSKFRFSYVAWVIKCLEGMNEGAKEELALILEASVRQGRMCRVYGLWSEGVEGPLYMVCERQRCNLLDKFGELGNGFLAVSEGGLELDKGGIFSFLMIGKGICEAVLALHLEGLVAGCLGLSCFSFDELGGICVDLNEALMLARKFVNAVSVEHKEEAMCKGCLENEVFASPEVLYELLHKRGTAPDSGHSRYPIGYGSDVWSLACVLLRLLIGNVLAWNTLEMKEENDGDSSASYACWVEKVSSVLEDKLGSEYLSLRQILCKCLDVNPGNRPDVVDVRKCIQNMLVKPQFDFLGNLEVTISRDYTGICLVLGELCLLPKQSSNELIEHELWEKEIGGQPNVVQDGKGKSDEDFAAGLPKGMTELKDLQGHLDCISGLAVGGRYLLSSSFDKTVHVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWYEKKDWRFSGIHSLVVSKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHSPLTVLGEDPPAEMKSILAITVDRHLLVAAHENGCIKVWRNDVFMNSKTLHKGAIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKAYGSIPCSAVATAILCSQGKLYVGYADKSIKLLLI* >Glyma06g12310.2 sequence type=predicted peptide gene model=Glyma06g12310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPPECPVCLQSFDERDAIPRVLSCGHSVCEACLAELPQRYQDTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQHSPSPSSSSSSDHSQIPNQRSTTNSCYYHPPFSSHELYVTWKDWILPHDAVLTDDHCIGWFSSTKGRGCFGVNRSVSLAPIVCFPPRDRSKFRFSYVAWVIKCLEGMNEGAKEELALILEASVRQGRMCRVYGLWSEGVEGPLYMVCERQRCNLLDKFGELGNGFLAVSEGGLELDKGGIFSFLMIGKGICEAVLALHLEGLVAGCLGLSCFSFDELGGICVDLNEALMLARKFVNAVSVEHKEEAMCKGCLENEVFASPEVLYELLHKRGTAPDSGHSRYPIGYGSDVWSLACVLLRLLIGNVLAWNTLEMKEENDGDSSASYACWVEKVSSVLEDKLGSEYLSLRQILCKCLDVNPGNRPDVVDVRKCIQNMLVKPQFDFLGNLEVTISRDYTGICLVLGELCLLPKQSSNELIEHELWEKEIGGQPNVVQDGKGKSDEDFAAGLPKGMTELKDLQGHLDCISGLAVGGRYLLSSSFDKTVHVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFIWGIAAPLRQDPLRKWYEKKDWRFSGIHSLVVSKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHSPLTVLGEDPPAEMKSILAITVDRHLLVAAHENGCIKVWRNDVFMNSKTLHKGAIFAMSMQGKCLYTGGWDKNVNIQELSGDEFELDVKAYGSIPCSAVATAILCSQGKLYVGYADKSIKVYL*
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