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Report for Sequence Feature Glyma06g12260

Feature Type:gene_model
Chromosome:Gm06
Start:9448446
stop:9453862
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g12260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24590AT Annotation by Michelle Graham. TAIR10: plastidic type i signal peptidase 1 | chr3:8970694-8972020 FORWARD LENGTH=291 SoyBaseE_val: 1.00E-52ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042793GO-bp Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051604GO-bp Annotation by Michelle Graham. GO Biological Process: protein maturation SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009526GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid envelope SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008233GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidase activity SoyBaseN/AISS
GO:0008236GO-mf Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity SoyBaseN/AISS
KOG0171 KOG Mitochondrial inner membrane protease, subunit IMP1 JGI ISS
PTHR12383Panther PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED JGI ISS
PTHR12383:SF1Panther MITOCHONDRIAL INNER MEMBRANE PROTEASE JGI ISS
PF00717PFAM Peptidase S24-like JGI ISS
UniRef100_B9S2V6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Signal peptidase I, putative n=1 Tax=Ricinus communis RepID=B9S2V6_RICCO SoyBaseE_val: 2.00E-56ISS
UniRef100_I1KAD4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAD4_SOYBN SoyBaseE_val: 4.00E-141ISS

Expression Patterns of Glyma06g12260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g12260 not represented in the dataset
Glyma06g12260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g12260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g116300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g12260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g12260
>Glyma06g12260.2   sequence type=transcript   gene model=Glyma06g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGAAAGTGCATTTGTATTTTGACGTTTGACTGGCATAACGATAGAGGAAAAACATTAGTAGTATTGGCCTTGCTTGCAAGAAAGCGCGTGGGCTAGCTAGCTTGTCGTGGAAACTTACTCCCTAAGTTTCAACTGTTCCACCATTTATATATCTCTTTCTCTCTCTCACTCTAAAGACACAAGCTGGGGAGTTCTTCCACGGAGATCATCATCTTCACTTCAATTCAGTTTACTCATCGTGTGATTTCATCCAAAGTTAGCAACATGAGCTTCTTGAGGCCTTCTGCGTTGTACAACTTTCTGATCAGTTATCCTGCGCTGCGATGGCTGCCATGTCAGAGTTGGGGCTTCCTTCGATGGCCCGGCCTTGATGGGTTCTTCAGGCTTTTCGTGGTTGTGCTTCTGTGGTCTACACTATCCGAGCTTCGCTTCATACCCTCATCTTCTATGTACCCCACCCTTCGTGTTGGCGACCGAATTATTGTCGAAAAGGCTTCATATTACATCAGGAGTCCAGCTATACATGATATTGTAACATTTAAGGATCCAACACAGTCCTCTGGGGAAAACACAGATGCTGTTTTTATCAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTAATCATGGGGCACTCTACATCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCCGAGCCACCAGCATACGCAATGCAATTAACTGGGACCGCTTCCTGTGAAGAACATAGTTGGAAGATATGTCACGTGCTATCATAGACCAAGAAACATTTGACAGAGATATCATTGAGATGTATTGAAGGAACTGGTGTTCTTTTACTATGGTCTGACCAGTGGGACGGCATACTAGGCCATGTCATGTGATTTCCATGAAGAGTTCCCTCCAGCTGTTCCATAAATGATGCACATCATTTAGCCATTCTTTATGGGATTGGATTCTCATATGCATGTAGTGAGGTTTCCCTCGTTCAGAGCATGAAATGAATCTACTGAAAAAATGTCATGTGATTTCTGAAGGGTTCACTGTTAGTTGAGTAACGATGCTTGCCCTTTGCCAATAAATATTCGTGTAGGTATCCAAGTTTCTTTAGCAGTATTGAAATAACATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTGAAAGCTTTGCTTCTTTGTTAAATTTTGTGTTCTTTTTTGTTGCATGAATTTGCTACCAAAAACTAGAGGGCAACTTTAAATGAAAAGTATTAGGGAGTTGACCACTCAAAAAATAAAAATTGAAGGGTTAAAAGTAGAAATCTTAAAAAAATTAGGGTAGTAAATCCATTTTTTTTATTATGACAATGCATAGATATTAAATCAATAATTTTATATTTAAATTATTTTTATGTCCAG
Coding sequences of Glyma06g12260
>Glyma06g12260.1   sequence type=CDS   gene model=Glyma06g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCTTGAGGCCTTCTGCGTTGTACAACTTTCTGATCAGTTATCCTGCGCTGCGATGGCTGCCATGTCAGAGTTGGGGCTTCCTTCGATGGCCCGGCCTTGATGGGTTCTTCAGGCTTTTCGTGGTTGTGCTTCTGTGGTCTACACTATCCGAGCTTCGCTTCATACCCTCATCTTCTATGTACCCCACCCTTCGTGTTGGCGACCGAATTATTGTCGAAAAGGCTTCATATTACATCAGGAGTCCAGCTATACATGATATTGTAACATTTAAGGATCCAACACAGTCCTCTGGGGAAAACACAGATGCTGTTTTTATCAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTAATCATGGGGCACTCTACATCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCCGAGCCACCAGCATACGCAATGCAATTAACTCATGTGCCCAATGGTCATGTTTATGTGTTGGGGGATAATCGTAACAATAGTTATGACTCCCATGTGTGGGGACCGCTTCCTGTGAAGAACATAGTTGGAAGATATGTCACGTGCTATCATAGACCAAGAAACATTTGA

>Glyma06g12260.2   sequence type=CDS   gene model=Glyma06g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCTTGAGGCCTTCTGCGTTGTACAACTTTCTGATCAGTTATCCTGCGCTGCGATGGCTGCCATGTCAGAGTTGGGGCTTCCTTCGATGGCCCGGCCTTGATGGGTTCTTCAGGCTTTTCGTGGTTGTGCTTCTGTGGTCTACACTATCCGAGCTTCGCTTCATACCCTCATCTTCTATGTACCCCACCCTTCGTGTTGGCGACCGAATTATTGTCGAAAAGGCTTCATATTACATCAGGAGTCCAGCTATACATGATATTGTAACATTTAAGGATCCAACACAGTCCTCTGGGGAAAACACAGATGCTGTTTTTATCAAGAGAATTGTTGCAAAAGCAGGAGACACTGTTGAGGTTAATCATGGGGCACTCTACATCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCCGAGCCACCAGCATACGCAATGCAATTAACTGGGACCGCTTCCTGTGAAGAACATAGTTGGAAGATATGTCACGTGCTATCATAG
Predicted protein sequences of Glyma06g12260
>Glyma06g12260.1   sequence type=predicted peptide   gene model=Glyma06g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFLRPSALYNFLISYPALRWLPCQSWGFLRWPGLDGFFRLFVVVLLWSTLSELRFIPSSSMYPTLRVGDRIIVEKASYYIRSPAIHDIVTFKDPTQSSGENTDAVFIKRIVAKAGDTVEVNHGALYINGVAQQEDFIAEPPAYAMQLTHVPNGHVYVLGDNRNNSYDSHVWGPLPVKNIVGRYVTCYHRPRNI*

>Glyma06g12260.2   sequence type=predicted peptide   gene model=Glyma06g12260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFLRPSALYNFLISYPALRWLPCQSWGFLRWPGLDGFFRLFVVVLLWSTLSELRFIPSSSMYPTLRVGDRIIVEKASYYIRSPAIHDIVTFKDPTQSSGENTDAVFIKRIVAKAGDTVEVNHGALYINGVAQQEDFIAEPPAYAMQLTGTASCEEHSWKICHVLS*






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