SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G15960 | AT | Annotation by Michelle Graham. TAIR10: NRAMP metal ion transporter 6 | chr1:5482202-5485066 REVERSE LENGTH=527 | SoyBase | E_val: 0 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006828 | GO-bp | Annotation by Michelle Graham. GO Biological Process: manganese ion transport | SoyBase | N/A | ISS |
| GO:0006875 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis | SoyBase | N/A | ISS |
| GO:0015691 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cadmium ion transport | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0070574 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cadmium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015086 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cadmium ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015103 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inorganic anion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0046873 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG1291 | KOG | Mn2+ and Fe2+ transporters of the NRAMP family | JGI | ISS | |
| PTHR11706 | Panther | MANGANESE TRANSPORTER | JGI | ISS | |
| PTHR11706:SF10 | Panther | METAL TRANSPORTER NRAMP (NRAMP) | JGI | ISS | |
| PF01566 | PFAM | Natural resistance-associated macrophage protein | JGI | ISS | |
| UniRef100_I1KAC9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAC9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_J7ILM4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Natural resistance-associated macrophage protein 1 n=1 Tax=Arachis hypogaea RepID=J7ILM4_ARAHY | SoyBase | E_val: 0 | ISS |
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Glyma06g12190 not represented in the dataset |
Glyma06g12190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g115800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12190.1 sequence type=CDS gene model=Glyma06g12190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGCCTGACACAGCATCAACCAAAGGGGGTTAATGGAGGTAGCAGCCGCATAGCAGCCGTCAATGTCACACCTTCTAATAACCTTTCTACACCATCTCATCATGATGCCTCCTCAAATCATCAGAAACCTGGGTGGAAAAAGTTCCTGTCATATGTAGGTCCTGGCTTTCTGGTCTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATCTTCAAGCTGGAGCTGACCACAAATATGAGCTGCTGTGGGTAATACTTATTGGACTGGTGTTTGCGCTTATAATTCAATCATTGGCTGCGAATCTCGGCGTAACCACTGGCAAACACCTTTCAGAATTATGTAAAGCTGAATACCCATTATTGGTCAAGTACTGCTTATGGTTATTAGCTGAGCTGGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACGGCCTTTGCTTTGAACATACTCTTCCACATCCCTGTATGGGCAGGAGTTCTAATAACTGGCTGCAGCACCCTCTTATTTCTTGGTCTGCAGAGATTTGGGGTAAGGAAGTTAGAGCTGTTGATATCAATCCTAGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTATGTAAAACCTCCTGCATCTGGTGTATTGAAAGGAATGTTTGTGCCTAAACTCAGTGGTCAAGGAGCCACAGGCGATGCTATTGCCCTTTTGGGTGCACTTGTCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTGTCTAGAAAAGTACCCAGTTCCGTGCGTGGCATCAATGATGCATGTAGATACTTTCTCATGGAAAGTGGATTCGCACTGTTTGTGGCATTTCTGATCAATGTTGCAATGATTTCTGTGGCTGGAACTGTTTGCTCTGCCGACAATCTTTCTGCAGAAAATGCTGATCAATGCAGCGATCTTACCCTTAACTCTGCTTCCTTCCTTCTCAAGAATGTTTTGGGACGGTCGAGCTCAACCATTTATGCCATAGCACTGCTCGCCTCAGGACAAAGTTCGGCTATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTCTTGGACATGAGGATGAAAAGATGGATTAGAAATTTTGTGACTAGGTGCATTGCCATAGCACCTAGTCTTATTGTTTCCATCATTGGTGGTTCTCAAGGGGCTGGTCGGCTTATCATCATCGCATCGATGATACTTTCATTCGAGCTCCCATTCGCATTAATTCCACTCCTTAAGTTCAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATAATTATCATTGTCATCTCTTGGATCCTAGGCTTGGGGATCATTGGTATCAACGTGTACTACCTCTCCACCGCCTTCGTGGGTTGGCTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTCATAGGGATCATAGTGTTTCCTCTAATGGCACTATATGTTGCTGCAGTAATCTACCTAACCTTCAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGAACCAGCAATGCAAACCCACATGGAAAAGGGGTTTATGGCTAATGGTCAATTAGAGTTGAGTCAAGTTCCCTACAGAGAAGATTTGGCTGATATCCCACTACCACAATAG
>Glyma06g12190.1 sequence type=predicted peptide gene model=Glyma06g12190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASLTQHQPKGVNGGSSRIAAVNVTPSNNLSTPSHHDASSNHQKPGWKKFLSYVGPGFLVSLAYLDPGNMETDLQAGADHKYELLWVILIGLVFALIIQSLAANLGVTTGKHLSELCKAEYPLLVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLITGCSTLLFLGLQRFGVRKLELLISILVFVMAGCFFGEMSYVKPPASGVLKGMFVPKLSGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPSSVRGINDACRYFLMESGFALFVAFLINVAMISVAGTVCSADNLSAENADQCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDMRMKRWIRNFVTRCIAIAPSLIVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIVISWILGLGIIGINVYYLSTAFVGWLIHSSLPKVANVFIGIIVFPLMALYVAAVIYLTFRKDTVKTYIETKNEPAMQTHMEKGFMANGQLELSQVPYREDLADIPLPQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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