Glyma06g12170 - SoyBase

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Report for Sequence Feature Glyma06g12170

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9396464
stop:	9402922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21700	AT	Annotation by Michelle Graham. TAIR10: SWITCH/sucrose nonfermenting 3C \| chr1:7620156-7623978 REVERSE LENGTH=807	SoyBase	E_val: 0	ISS
GO:0006338	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin remodeling	SoyBase	N/A	ISS
GO:0007062	GO-bp	Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion	SoyBase	N/A	ISS
GO:0031048	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA	SoyBase	N/A	ISS
GO:0040029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression, epigenetic	SoyBase	N/A	ISS
GO:0045132	GO-bp	Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016514	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: SWI/SNF complex	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1279	KOG	Chromatin remodeling factor subunit and related transcription factors	JGI		ISS
PTHR12802	Panther	SWI/SNF COMPLEX-RELATED	JGI		ISS
PTHR12802:SF21	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
PF04433	PFAM	SWIRM domain	JGI		ISS
UniRef100_B9H7H8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromatin remodeling complex subunit n=2 Tax=Populus trichocarpa RepID=B9H7H8_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233930F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233930F related cluster n=1 Tax=unknown RepID=UPI000233930F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12170

Paralog	Evidence	Comments
Glyma04g42601	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g115600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12170

Limit To All Plant Sequences

>Glyma06g12170.2   sequence type=CDS   gene model=Glyma06g12170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCTTCTCCTTCAGAGAACCGAACCAGATGGAGGAAGCGAAAGAGAGATTCGCAAATCAGCCGGCGCCACCAGAAGCACGAGGAGGAGGAGGACGACGACGAAGAAAACCCCAATGCGGCGGAGGAAGACCACGCCGAACGCGACTACGATTCGGAGGATCAGACGCACCACAACCACCCTAATTCGCAACCGCACGTGGAGGCCGAGGTTCTCTCTGACCACGGCGTTCAGATTTCGCAGTTCCCCGCGGTGATTAAGCGCTCCGTGAACCGCCCTCACTCCTCCGTCACCGCAATTGTTGCTCTGGAGCGAGCCCTCGAGTCCGGAGACAACAAGGCACAAAGCGCCCTCGATGCTCCGATTCTCGAGAACGTGTCTCACGGCCAGCTTCAAGCGCTATCGTCTGTTCCCTCTGATAACTTCGCTCTCGACTGTGATTCCTCTTTTGTCATCACTCCCCCTCCCATTTTGGAAGGTCGTGGCGTTGTTAAGCGCTTTGGAACTAAGGTTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCGCCTGCCACGGTGCACAGGTTGGAGAGGCAAGTGGTGCCACATTTCTTTTCAGGGAAATCGCCGGATCATACTCCGGAGAAGTACATGGAATGTAGGAACTGCATTGTTGCTTTGCACATGGAGGACCCTGGGATGAGGATTACGGTTTCTGATTGTCAGGGTTTGTTGGCTGGGGTTAATGTTGAAGATTTGACTCGGATTGTTAGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCGGATACCAAGTCATGAGTCTCCCAATGCTGTGTCTTGCCTGAGGGATGAGCTGAGTGGAGAGGTCCGTGTGCCGTCGGAGGCTTTGAAATCCATAGACAGTTTGATCAAATTTGACAAGCCCAACTGTAAGCTGAAAGCAGACGAAATTTATTCGTCATTGACTGCACATAGTGCCGATGTCTTAGATCTGGAGGATAGAATAAGAGAGCATCTATCGGAGAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGTTGTATACTATCAGTCTCAAAAGGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGACGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTGTAAGGGTGGATTCGACAAGGGATTATGGTGAACTAGATGGGGATAATTGGACTGATCAAGAAACTTTGCTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATAGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTTGAAAATATTAACGTTCCAAGTTTGTCTTTGTCATCCAATGCAATAAATAGAGATGATAGTGGAAGACTGCATTGCTACTCAAATGGAGTTACTGCAGGACCTGTCTATCAAACCAGAGATTCTGACCACCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCCCATGCAGCGTTAGCAGTATTGTCAGAGGATAATTCTGGCAGCACGTCACAGTTGGAAGCACCAGGACATGATAATAGGACAAATTCAGAAAGCATACATTATCGAGATGGTGGCCCTCATCAAGAAACAGCAGTTTCAAATCATAATGAGGATAAGGCAAAGGTACATGGTTCATGGGGTATATATGAGGGTAGGACAACCCCACTCTCTGCTGAGAAAGTTAAAGATGCGGCTAAAGCTGGCCTTTCTGCTGCAGCCATGAAAGCAAAATTATTTTCCGATCACGAAGAACGAGAAATTCAGAGGTTATGTGCTAATATAGTTAATCATCAGCTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAATGTGAACAACTGGAGAGAACAAAACAAAGGATAGCTGCTGATCGGTCCCGCATGATGTCAGCACGTCTTGGAACTGTGGGAGCCACACCCACAATGAATGCATCGGGTGTTGGTACTTCAATGGCTAGTAATGGCAACAATAGGCAACAAATAATCTCTGCTTCTTCCTCACAACCCAGCATTTCAGGCTATGGCAACAACCAACCAGTTCATCCACATATGTCCTTTGCCCCACGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAACAATCACAATCAGCTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGCCTGTATCGGGAACTAACTCTGGTTTAGGTTAA

Predicted protein sequences of Glyma06g12170

Limit To All Plant Sequences

>Glyma06g12170.2   sequence type=predicted peptide   gene model=Glyma06g12170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPASPSENRTRWRKRKRDSQISRRHQKHEEEEDDDEENPNAAEEDHAERDYDSEDQTHHNHPNSQPHVEAEVLSDHGVQISQFPAVIKRSVNRPHSSVTAIVALERALESGDNKAQSALDAPILENVSHGQLQALSSVPSDNFALDCDSSFVITPPPILEGRGVVKRFGTKVLVVPMHSDWFSPATVHRLERQVVPHFFSGKSPDHTPEKYMECRNCIVALHMEDPGMRITVSDCQGLLAGVNVEDLTRIVRFLDHWGIINYCVRIPSHESPNAVSCLRDELSGEVRVPSEALKSIDSLIKFDKPNCKLKADEIYSSLTAHSADVLDLEDRIREHLSENHCNYCSCPLPVVYYQSQKEVDILLCTDCFHDGRFVIGHSSIDFVRVDSTRDYGELDGDNWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKFENINVPSLSLSSNAINRDDSGRLHCYSNGVTAGPVYQTRDSDHRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSEDNSGSTSQLEAPGHDNRTNSESIHYRDGGPHQETAVSNHNEDKAKVHGSWGIYEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFSDHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRIAADRSRMMSARLGTVGATPTMNASGVGTSMASNGNNRQQIISASSSQPSISGYGNNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSASSTAMFNAPSNVQPTTNHPLLRPVSGTNSGLG*

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