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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G21710 | AT | Annotation by Michelle Graham. TAIR10: 8-oxoguanine-DNA glycosylase 1 | chr1:7624439-7625869 FORWARD LENGTH=365 | SoyBase | E_val: 1.00E-163 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base-excision repair | SoyBase | N/A | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008534 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidized purine nucleobase lesion DNA N-glycosylase activity | SoyBase | N/A | ISS |
| KOG2875 | KOG | 8-oxoguanine DNA glycosylase | JGI | ISS | |
| PTHR10242 | Panther | 8-OXOGUANINE DNA GLYCOSYLASE | JGI | ISS | |
| PF00730 | PFAM | HhH-GPD superfamily base excision DNA repair protein | JGI | ISS | |
| PF07934 | PFAM | 8-oxoguanine DNA glycosylase, N-terminal domain | JGI | ISS | |
| UniRef100_G7LGK0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: N-glycosylase/DNA lyase n=1 Tax=Medicago truncatula RepID=G7LGK0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KAC6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAC6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g12160 not represented in the dataset |
Glyma06g12160 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g115500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12160.1 sequence type=CDS gene model=Glyma06g12160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTCGTTGCATTTGAGAACCATCATCCAGTTCCCGGCGATGACGAACAAGAGAAAAAGATCCCAGAAACATACCCCACCACCTCCTCCTCCCTCAACACCCCCAACTCCACAAACCCAAGCCCGCCACTCCCTCAACACCGCAAAAGCCCGGGCCTGGGCCCCTCTCAGCCTCACCCGCCACGAACTCTCCTTACCCCTCACCTTCCCCACGGGCCAAACCTTCCTCTGGAAAAACACCGCCCCTTCACAATACACCGGAGTCGTCGGGCCCCACCTCATTTCCCTCAAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTCCACTCCCCCTCCCACTCCGACACCGCCGAAACTGCCCTGCTTGACTTCCTAAATGCCACCGTTTCGCTCGCCGACTTATGGAAGACGTTTTCCGCTTCCGACGCAAGGTTCGCCGAGCTCGCGCACCACTTAAGCGGCGCCCGAGTCCTCCGGCAAGACCCTTTCGAGTGTTTGATTCAGTTTCTGTGCTCTTCTAATAACAACATCGGAAGAATCACGAAAATGGTGAATTACGTGTCCTCCCTGGGAACTCACGTGGGAGACGTTGGAGAGTTTCAGTTCCACGCTTTCCCTTCTTTGGAACAACTTTCCTCCGTCTCAGAGCAACAACTCAGAGACGCCGGTTTCGGTTACAGGGCTAAATATATAATTGGTACGATTAATGCATTGAAATCAAAACCCGGTGGAGGCGAAGAATGGCTTCGTTCTCTTCGTAAGATGGAGCTTCGAGATGTTATATCTGCACTTTGTACGTTACCCGGTGTGGGTCCTAAAGTGGCTGCTTGCATTGCTCTCTTTTCGCTTGATCAGCACCATGCTGTTCCTGTTGACACACACGTGTGGCGGATTGCCACCAAGTATCTCTTACCTGAGCTTGCAGGTTCCCAGTTGACACCCAAGCTCTGCGATCGTGTTGCAGAGGCGTTTGTAACCAAATATGGTAAATATGCTGGCTGGGCGCAGACTCTATTGTTCATAGCTGAATTACCCTCACAAAAAGCCCTCCTACCTTCACATTTGTTGACTGTTAAACAACGCAATGCTGCAAAGATAGAAGGCAGCGAAGAAGAAGTTGATTGA
>Glyma06g12160.1 sequence type=predicted peptide gene model=Glyma06g12160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKSLHLRTIIQFPAMTNKRKRSQKHTPPPPPPSTPPTPQTQARHSLNTAKARAWAPLSLTRHELSLPLTFPTGQTFLWKNTAPSQYTGVVGPHLISLKHLQNGDVSYCLHSPSHSDTAETALLDFLNATVSLADLWKTFSASDARFAELAHHLSGARVLRQDPFECLIQFLCSSNNNIGRITKMVNYVSSLGTHVGDVGEFQFHAFPSLEQLSSVSEQQLRDAGFGYRAKYIIGTINALKSKPGGGEEWLRSLRKMELRDVISALCTLPGVGPKVAACIALFSLDQHHAVPVDTHVWRIATKYLLPELAGSQLTPKLCDRVAEAFVTKYGKYAGWAQTLLFIAELPSQKALLPSHLLTVKQRNAAKIEGSEEEVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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