Glyma06g12140 - SoyBase

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Report for Sequence Feature Glyma06g12140

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9375886
stop:	9378777
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21780	AT	Annotation by Michelle Graham. TAIR10: BTB/POZ domain-containing protein \| chr1:7652476-7653866 FORWARD LENGTH=326	SoyBase	E_val: 3.00E-173	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0006891	GO-bp	Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009954	GO-bp	Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation	SoyBase	N/A	ISS
GO:0010227	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral organ abscission	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0048439	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower morphogenesis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031463	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Cul3-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR24413	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24413:SF216	Panther		JGI		ISS
PF00651	PFAM	BTB/POZ domain	JGI		ISS
UniRef100_G7J501	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TD and POZ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J501_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KAC4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAC4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12140

Paralog	Evidence	Comments
Glyma04g42630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g115300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12140

Limit To All Plant Sequences

>Glyma06g12140.1   sequence type=CDS   gene model=Glyma06g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGATAGGGTGGAAACGCTTGCCAGATTAGCCCAGTGGAAAATCGACAACTTCGGACTTTGTTCCTACAAAAAATCTGACCCCTTCAAGGTCGGAATCTGGAACTGGTACTTTTCAATAGTGAGGAATAGGTACCTCTACATACATCTTTTTCCAGAACCTTCGCAGGTTTTGAAGGATAACCCACCCTTTGCTCGATTCATTCTTCGAGTCTCCAATGCCGGATCATCCCGCAGCTTTCATATTTCCCCTGTTCAAGAAAAGCTGCTTAGGACACATGACGACTTTGTCTGGCCTGTGGATACAACTTTTGTTGGTCGCTTCATCATTGATGTTGAGTTTCTAGACCTAAAGATATGCCCTCCTAATGGTGGAGAAACTAGTCCTGTATGGCCATCTGATGGAAATTCTCAATCCATTGCATTTCAAAGTAGCATTCTTCGTTGCCTCTCTCGTATGCTTGATGAGGCTATACATGCTGACCTAACTATCATGACAGCCGATGGAAGCACGTTGAGAGCTCATAAGGCAGTTCTCTCAGCAAGTTCCCCAGTGTTCCAGAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCCTCCACGATCCATATAGAAGACATGTCACTCGAGTCCTGCACGGCTCTTCTAAGTTACTTGTATGGAGCAATCAAGCAAGAAGATTTCTGGAAACACCGGCTTGCATTGCTTGGAGCTGCTAATAAATATGACATTGGAAGTCTCAAAGACATCTGTGAGGAAAGCCTCCTGGAAGATCTCAGCACAGGAAATGTTCTTGAGATGCTAAATGAGGCTTGGCTTTATCAATTGCACAAGTTAAAGAAAGGATGTTTGGTGTTCTTATTTCAATTTGGTAAGATACATGATATTAAAGATGAAATAAATAATTTTTTCCAGCATGCAGATAGGGAGCTAATGCTGGAGATGTTTCAGGAGGTGCTTTCAATTTCGAACCCGATATAG

Predicted protein sequences of Glyma06g12140

Limit To All Plant Sequences

>Glyma06g12140.1   sequence type=predicted peptide   gene model=Glyma06g12140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDRVETLARLAQWKIDNFGLCSYKKSDPFKVGIWNWYFSIVRNRYLYIHLFPEPSQVLKDNPPFARFILRVSNAGSSRSFHISPVQEKLLRTHDDFVWPVDTTFVGRFIIDVEFLDLKICPPNGGETSPVWPSDGNSQSIAFQSSILRCLSRMLDEAIHADLTIMTADGSTLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALLSYLYGAIKQEDFWKHRLALLGAANKYDIGSLKDICEESLLEDLSTGNVLEMLNEAWLYQLHKLKKGCLVFLFQFGKIHDIKDEINNFFQHADRELMLEMFQEVLSISNPI*

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