Glyma06g12080 - SoyBase

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Report for Sequence Feature Glyma06g12080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9296681
stop:	9304521
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21750	AT	Annotation by Michelle Graham. TAIR10: PDI-like 1-1 \| chr1:7645767-7648514 FORWARD LENGTH=501	SoyBase	E_val: 2.00E-157	ISS
GO:0006662	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycerol ether metabolic process	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0010043	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to zinc ion	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0043067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0000326	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole	SoyBase	N/A	ISS
GO:0000327	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: lytic vacuole within protein storage vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003756	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide isomerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
GO:0015035	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein disulfide oxidoreductase activity	SoyBase	N/A	ISS
GO:0016853	GO-mf	Annotation by Michelle Graham. GO Molecular Function: isomerase activity	SoyBase	N/A	ISS
KOG0190	KOG	Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit)	JGI		ISS
PTHR18929	Panther	PROTEIN DISULFIDE ISOMERASE	JGI		ISS
PTHR18929:SF32	Panther	PROTEIN DISULFIDE ISOMERASE	JGI		ISS
PF00085	PFAM	Thioredoxin	JGI		ISS
UniRef100_I7FST9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein disulfide isomerase-like protein n=1 Tax=Glycine max RepID=I7FST9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233930B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233930B related cluster n=1 Tax=unknown RepID=UPI000233930B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g12080 not represented in the dataset	Glyma06g12080 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g12080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g114700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g12080

Limit To All Plant Sequences

>Glyma06g12080.2   sequence type=CDS   gene model=Glyma06g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCAAACTTCTCCGACACTGTAAGCACGTACAGTCTCATCGTCGTCGAGTTCTATGCACCAAGGTGTGGCCACTGTAAGAAGCTTGCTCCGGAGTATAAGAAAGTTGCTTCTATCTTGAGTAGTCATGATCCTCCCATTGTATTGGCTAAAGGGTACCCAAGAATTAAGATTCTGAGAAATGGGGGAAAGAATGTTCAAGAATACAAAGGTCCCCATGAAGCAGACGGCATCGTTGACTATTTGAAGAAACAAAGTGGTTGTAGTGTTTCCAAATTTTCTGGGGAGGAGTTTGACAACTTTACTGCAGAGAAGTTGCGTGCTGACTATGACTTGGGTCACACTATGAATGCCAAACACCTTCCAAGAGGAGAATCATCAGTCACTGGGCCCATAGTTAGGTTATTTAATCCATTTGACGAATTTTTTGTTGATTTCCAGCTAGATTTCCATGTTGAAGCTCTAGGGAATTTTGTTGAAGAATCTAGTGCTGAATCTTTCAAATCAAAATACCGAGAAACTGCTGAGCAATATAGACAACAGGGTTTAAGCTTTCTGGTTAGAGATGTTAAGTCTACTAAAGGTTCTTTCCAGTATTTTGGAGTGAAGGAAGACCAAGTACCTCTAATTACGGTAACACGTAATGATGGGAAGAAATTTCTTAAACCCAATTTGGAACCTGATCACATGTCAACTTGGTTGAAGGCATACAAGGAAGGAAATATTGCCCCATATTTTAAGTCTGAACCTATTCCTGAAGCCAACAATGAACCTGTTAAAGTGGTAGTTGGGGACAGTCTCCAGGACATAGTTTTCAACTCTGGGAAGAATGTTTTGCTGGAATTTTCTTCTCCCTGGTGTGGTTATTGCATAGAATTAGCACCAATATTGGAGGAAGTTGCTGTCTCATATCAAAGTGATGCTGATGTTACTATTGCAAAACTGGATGGAGTTGCAAACGATATCCCAAGAGAAACCTTTGAAGTCAGAGGTTATCCAACTGTGTACTTCAGGTCAGCAAGTGGAAAGATATCACAATACGATGGCAATAGGACTAAGGAAGACATTATAGAATTCATTGAAAAGAACCAAGACAAACCTGCTCAACAAGGAAAAGATGAACTAGAAAAAGGATAA

Predicted protein sequences of Glyma06g12080

Limit To All Plant Sequences

>Glyma06g12080.2   sequence type=predicted peptide   gene model=Glyma06g12080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HSNFSDTVSTYSLIVVEFYAPRCGHCKKLAPEYKKVASILSSHDPPIVLAKGYPRIKILRNGGKNVQEYKGPHEADGIVDYLKKQSGCSVSKFSGEEFDNFTAEKLRADYDLGHTMNAKHLPRGESSVTGPIVRLFNPFDEFFVDFQLDFHVEALGNFVEESSAESFKSKYRETAEQYRQQGLSFLVRDVKSTKGSFQYFGVKEDQVPLITVTRNDGKKFLKPNLEPDHMSTWLKAYKEGNIAPYFKSEPIPEANNEPVKVVVGDSLQDIVFNSGKNVLLEFSSPWCGYCIELAPILEEVAVSYQSDADVTIAKLDGVANDIPRETFEVRGYPTVYFRSASGKISQYDGNRTKEDIIEFIEKNQDKPAQQGKDELEKG*

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