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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77490 | AT | Annotation by Michelle Graham. TAIR10: thylakoidal ascorbate peroxidase | chr1:29117688-29120046 FORWARD LENGTH=426 | SoyBase | E_val: 0 | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0015979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthesis | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0004601 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: peroxidase activity | SoyBase | N/A | ISS |
| GO:0016688 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: L-ascorbate peroxidase activity | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| PF00141 | PFAM | Peroxidase | JGI | ISS | |
| UniRef100_I1KAB1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAB1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5QHW7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast thylakoid-bound ascorbate peroxidase n=1 Tax=Vigna unguiculata RepID=Q5QHW7_VIGUN | SoyBase | E_val: 0 | ISS |
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Glyma06g12020 not represented in the dataset |
Glyma06g12020 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g42720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g114400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g12020.2 sequence type=transcript gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAAGGGTGGCCATCTGGCACATCATCCGAAACAAAAGGAGTGGAGAACGAAATAACCAAAAAAATACAAATATATAAATAATTAAAGCAGCCTCGACCCACAAAATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGGCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGTATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAAACTAAATATACGAAAGATGGGCCAGGAGCACCCGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCCTACTTCAAGGTCAGAAATATATACTTTTTTCTTTTGCCGGGGAGGGGGTAGGGCATTCTATAAGGGAGAGTGGTAGAGGAGAGGG >Glyma06g12020.5 sequence type=transcript gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAAGGGTGGCCATCTGGCACATCATCCGAAACAAAAGGAGTGGAGAACGAAATAACCAAAAAAATACAAATATATAAATAATTAAAGCAGCCTCGACCCACAAAATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGGTGCAAGAAATGTGAGGTTATTTAACTAACAGATGGTCACTTTGAGCTGCTAGGTTCTTTAAGACATCTTGGATGTGCAGACCTGATTATCCTGTCCTGATTCCATAGATA
>Glyma06g12020.1 sequence type=CDS gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGGCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGTATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAAACTAAATATACGAAAGATGGGCCAGGAGCACCCGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCCTACTTCAAGGACATCAAAGAAAAAAGGGATGAAGATCTATTGGTATTGCCAACTGATGCTGCTCTTTTTGAAGACCCATCCTTTAAGGTATATGCTGAGAAATATGCTGAAGATCAGGAAGCATTCTTTAAAGATTATGCTGAAGCCCATGCTAAACTTAGCAACCTAGGAGCCAAATTTGATCCTCTAGAGGGCATTGTGATAGATGATTCTCCAAATGCAGGGGGAGAGAAGTTTGTAGCAGCCAAGTACTCCACTGGAAAGAGTGAGCTGTCTGACTCTATGAAGCAGAAGATACGGGCTGAATATGAAGCAATTGGTGGAAGCCCAGATAAGCCTCTACAGTCAAACTATTTTCTAAATATCATGATTGTTATTGCTGTTTTGGCATTTTTGACATCACTGCTTGGAAACTAG >Glyma06g12020.2 sequence type=CDS gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGGCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGTATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAAACTAAATATACGAAAGATGGGCCAGGAGCACCCGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCCTACTTCAAGGTCAGAAATATATACTTTTTTCTTTTGCCGGGGAGGGGGTAG >Glyma06g12020.5 sequence type=CDS gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGGTGCAAGAAATGTGAGGTTATTTAACTAA
>Glyma06g12020.1 sequence type=predicted peptide gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAERVLLLTPSQSHHSPTTMAVLGGAASARIIPSVSLSTSSRSFFSLSSSSKLKCLRSSPRISHLFLNQQRAEVRVSSGGYGTVSAPKSVASDPDQLKSAREDIKELLNSKFCHPILIRLGWHDAGTYNKNIEEWPLRGGANGSLRFEVELKHGANAGLLNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKRDEDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPLEGIVIDDSPNAGGEKFVAAKYSTGKSELSDSMKQKIRAEYEAIGGSPDKPLQSNYFLNIMIVIAVLAFLTSLLGN* >Glyma06g12020.2 sequence type=predicted peptide gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAERVLLLTPSQSHHSPTTMAVLGGAASARIIPSVSLSTSSRSFFSLSSSSKLKCLRSSPRISHLFLNQQRAEVRVSSGGYGTVSAPKSVASDPDQLKSAREDIKELLNSKFCHPILIRLGWHDAGTYNKNIEEWPLRGGANGSLRFEVELKHGANAGLLNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKVRNIYFFLLPGRG* >Glyma06g12020.5 sequence type=predicted peptide gene model=Glyma06g12020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAERVLLLTPSQSHHSPTTMAVLGGAASARIIPSVSLSTSSRSFFSLSSSSKLKCLRSSPRISHLFLNQQRAEVRVSSGGYGTVSAPKSVASDPDQLKSAREDIKELLNSKFCHPILIRLGWHDAGTYNKNIEEWPLRGGANGSLRFEVELKHGANAGLLNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPGARNVRLFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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