Glyma06g12020 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g12020

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9265873
stop:	9272421
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g12020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77490	AT	Annotation by Michelle Graham. TAIR10: thylakoidal ascorbate peroxidase \| chr1:29117688-29120046 FORWARD LENGTH=426	SoyBase	E_val: 0	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0016688	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ascorbate peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_I1KAB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAB1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5QHW7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chloroplast thylakoid-bound ascorbate peroxidase n=1 Tax=Vigna unguiculata RepID=Q5QHW7_VIGUN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g12020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g12020

Paralog	Evidence	Comments
Glyma04g42720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g12020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g114400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g12020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g12020

Limit To All Plant Sequences

>Glyma06g12020.2   sequence type=transcript   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAGGGTGGCCATCTGGCACATCATCCGAAACAAAAGGAGTGGAGAACGAAATAACCAAAAAAATACAAATATATAAATAATTAAAGCAGCCTCGACCCACAAAATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGGCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGTATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAAACTAAATATACGAAAGATGGGCCAGGAGCACCCGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCCTACTTCAAGGTCAGAAATATATACTTTTTTCTTTTGCCGGGGAGGGGGTAGGGCATTCTATAAGGGAGAGTGGTAGAGGAGAGGG

>Glyma06g12020.5   sequence type=transcript   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAGGGTGGCCATCTGGCACATCATCCGAAACAAAAGGAGTGGAGAACGAAATAACCAAAAAAATACAAATATATAAATAATTAAAGCAGCCTCGACCCACAAAATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGGTGCAAGAAATGTGAGGTTATTTAACTAACAGATGGTCACTTTGAGCTGCTAGGTTCTTTAAGACATCTTGGATGTGCAGACCTGATTATCCTGTCCTGATTCCATAGATA

Coding sequences of Glyma06g12020

Limit To All Plant Sequences

>Glyma06g12020.1   sequence type=CDS   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGGCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGTATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAAACTAAATATACGAAAGATGGGCCAGGAGCACCCGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCCTACTTCAAGGACATCAAAGAAAAAAGGGATGAAGATCTATTGGTATTGCCAACTGATGCTGCTCTTTTTGAAGACCCATCCTTTAAGGTATATGCTGAGAAATATGCTGAAGATCAGGAAGCATTCTTTAAAGATTATGCTGAAGCCCATGCTAAACTTAGCAACCTAGGAGCCAAATTTGATCCTCTAGAGGGCATTGTGATAGATGATTCTCCAAATGCAGGGGGAGAGAAGTTTGTAGCAGCCAAGTACTCCACTGGAAAGAGTGAGCTGTCTGACTCTATGAAGCAGAAGATACGGGCTGAATATGAAGCAATTGGTGGAAGCCCAGATAAGCCTCTACAGTCAAACTATTTTCTAAATATCATGATTGTTATTGCTGTTTTGGCATTTTTGACATCACTGCTTGGAAACTAG

>Glyma06g12020.2   sequence type=CDS   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGATGCTGGGCCCCCTTCACCTGCTGATCATTTGCGTCAAGTTTTCTACCGTATGGGTTTGAATGACAAGGAAATTGTTGCATTATCTGGTGCACACACACTGGGGCGGTCTAGACCAGATCGCAGTGGTTGGGGAAAGCCTGAAACTAAATATACGAAAGATGGGCCAGGAGCACCCGGAGGACAATCCTGGACAGTGCAATGGTTGAAATTTGACAACTCCTACTTCAAGGTCAGAAATATATACTTTTTTCTTTTGCCGGGGAGGGGGTAG

>Glyma06g12020.5   sequence type=CDS   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGCGTGTGTTACTCCTCACTCCATCTCAGTCTCATCACTCTCCAACCACAATGGCTGTCTTGGGCGGCGCCGCCTCCGCTCGCATCATTCCCTCCGTCTCACTCTCCACCTCTTCTCGCTCCTTCTTCTCCTTATCATCCTCTTCCAAACTCAAATGCTTGCGCTCCTCTCCTCGCATTTCGCACCTCTTTCTCAATCAGCAAAGAGCGGAGGTTCGCGTTTCGAGTGGAGGATACGGAACGGTATCGGCGCCGAAGTCCGTTGCGTCTGATCCTGATCAGTTGAAGAGCGCTAGAGAAGACATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCATTCGTTTGGGATGGCATGATGCTGGTACATATAATAAGAATATTGAGGAGTGGCCACTGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAGTTGAGCTGAAACATGGAGCCAATGCTGGACTTTTAAATGCATTGAAACTTCTTCAGCCGATCAAAGACAAATATTCTGGTGTGACATATGCAGACTTATTTCAGTTGGCTAGTGCTACGGCTGTGGAGGAAGCTGGAGGCCCCAAAATCCCTATGAAATATGGAAGAGTGGATGTATCTGGACCTGAACAATGCCCTGAAGAAGGGAGACTTCCTGGTGCAAGAAATGTGAGGTTATTTAACTAA

Predicted protein sequences of Glyma06g12020

Limit To All Plant Sequences

>Glyma06g12020.1   sequence type=predicted peptide   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAERVLLLTPSQSHHSPTTMAVLGGAASARIIPSVSLSTSSRSFFSLSSSSKLKCLRSSPRISHLFLNQQRAEVRVSSGGYGTVSAPKSVASDPDQLKSAREDIKELLNSKFCHPILIRLGWHDAGTYNKNIEEWPLRGGANGSLRFEVELKHGANAGLLNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKRDEDLLVLPTDAALFEDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSNLGAKFDPLEGIVIDDSPNAGGEKFVAAKYSTGKSELSDSMKQKIRAEYEAIGGSPDKPLQSNYFLNIMIVIAVLAFLTSLLGN*

>Glyma06g12020.2   sequence type=predicted peptide   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAERVLLLTPSQSHHSPTTMAVLGGAASARIIPSVSLSTSSRSFFSLSSSSKLKCLRSSPRISHLFLNQQRAEVRVSSGGYGTVSAPKSVASDPDQLKSAREDIKELLNSKFCHPILIRLGWHDAGTYNKNIEEWPLRGGANGSLRFEVELKHGANAGLLNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPDAGPPSPADHLRQVFYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKVRNIYFFLLPGRG*

>Glyma06g12020.5   sequence type=predicted peptide   gene model=Glyma06g12020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAERVLLLTPSQSHHSPTTMAVLGGAASARIIPSVSLSTSSRSFFSLSSSSKLKCLRSSPRISHLFLNQQRAEVRVSSGGYGTVSAPKSVASDPDQLKSAREDIKELLNSKFCHPILIRLGWHDAGTYNKNIEEWPLRGGANGSLRFEVELKHGANAGLLNALKLLQPIKDKYSGVTYADLFQLASATAVEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPGARNVRLFN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain