Glyma06g11910 - SoyBase

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Report for Sequence Feature Glyma06g11910

Feature Type:	gene_model
Chromosome:	Gm06
Start:	9201199
stop:	9203788
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G21790	AT	Annotation by Michelle Graham. TAIR10: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein \| chr1:7654357-7655691 FORWARD LENGTH=288	SoyBase	E_val: 3.00E-131	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4474	KOG	Uncharacterized conserved protein	JGI		ISS
PF03798	PFAM	TLC domain	JGI		ISS
UniRef100_G7J4X1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TLC domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J4X1_MEDTR	SoyBase	E_val: 5.00E-143	ISS
UniRef100_I1KAA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAA0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11910

Paralog	Evidence	Comments
Glyma04g42850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g113400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g11910

Limit To All Plant Sequences

>Glyma06g11910.1   sequence type=CDS   gene model=Glyma06g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTGGAAAGCGGAACACGGTGGAGACATTCTTCTTAGCCACTCTCATTCTCTGGCTCGCTTCCCTTTGTTTCCAGATTTTCTTCAACAAACGTTGGGAGCTTCTCTCTGTTATCGCGGGTTGTTTCTTCTATCAGACATCTAACTGCCTCATCCGATTCTTCTTCTCCACCCATAAAGACCCTCTCTTCGTTAACACCTCTGTCTCTCTTCTCCACTCTCTCTTCACCTCCGCTTCAGTGATCTTCATCTTGTTCAGAGAGTTATGTAATGGGCCTAGTGGAATGTTTGACCACTCAAAGTTGGTTGAAGATGCTTGGCCCTGGGCATTTGAAGCGTTGAGCTTTTCATGTGGCTACTTTGCATATGATCAGTGGGATATGCTTCGTTACCGCTTATATAATGGTTGGATCCCATCTATCCTTGTGCATCATCTGGTTCTCCTTATTTGCTTCACTCTTGCTTTGTATCGAAATGTTACCATCAACTACCTTATTCTCACTCTTATCTGTGAGCTGCATTCCATCTTTCTTCATGTGAGAAAAGTCAGACGAATGGCCGGTGTTCGGGATGCAAAGAGCATTCTTGTTAGGTTAGAGTGGTTTCTGAATTGGGTCACCTTCTTTGTGGCAAGATCTGCACCTCACATTCTCATCACAGCCAAGCTCATCAAGGATGCTCACAAATTTGAAAAGGGTATGGAGCTGCCACTGGCTCTGTGTGGCATGGCTGGGATGAATTTGCTCAACATTGGTCTTGGCATTGATCTCCTTAAAGCTTTTAAGAGAGAGAGGAAGTCCCAGCTGGGTAATCTTCATCACCACCGTGAATGA

Predicted protein sequences of Glyma06g11910

Limit To All Plant Sequences

>Glyma06g11910.1   sequence type=predicted peptide   gene model=Glyma06g11910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGGKRNTVETFFLATLILWLASLCFQIFFNKRWELLSVIAGCFFYQTSNCLIRFFFSTHKDPLFVNTSVSLLHSLFTSASVIFILFRELCNGPSGMFDHSKLVEDAWPWAFEALSFSCGYFAYDQWDMLRYRLYNGWIPSILVHHLVLLICFTLALYRNVTINYLILTLICELHSIFLHVRKVRRMAGVRDAKSILVRLEWFLNWVTFFVARSAPHILITAKLIKDAHKFEKGMELPLALCGMAGMNLLNIGLGIDLLKAFKRERKSQLGNLHHHRE*

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