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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G18340 | AT | Annotation by Michelle Graham. TAIR10: basal transcription factor complex subunit-related | chr1:6311612-6313734 REVERSE LENGTH=301 | SoyBase | E_val: 1.00E-141 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0000439 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: core TFIIH complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2487 | KOG | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 | JGI | ISS | |
| PTHR12831 | Panther | TRANSCRIPTION INITIATION FACTOR IIH (TFIIH), POLYPEPTIDE 3-RELATED | JGI | ISS | |
| PF03850 | PFAM | Transcription factor Tfb4 | JGI | ISS | |
| UniRef100_G7J304 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: General transcription factor IIH subunit n=1 Tax=Medicago truncatula RepID=G7J304_MEDTR | SoyBase | E_val: 4.00E-175 | ISS |
| UniRef100_I1KA90 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA90_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g11810 not represented in the dataset |
Glyma06g11810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g42941 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g112400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11810.2 sequence type=transcript gene model=Glyma06g11810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCTAACCTAAATTCTTATGTGTCTTTGGTTTATAGTTGGGAGAACCCCAAATGATTCGTTGTATTAAAAGTTATGAATTTTTATTTCTTAAAAAATATGCATGAAAATGTGTGTTCATTAAAACAAATGCATCCCAGGTGTTAGTCACGTCCTCATTTGTCAACGTGCTATGTTACCCGCAAGGCATTCTTCCCCTTTAACCGGACACACCTGTTAGCCACTACGAGTGCTTCTAACAAGCATTTCCATCTTCAATTTGGGCACTGAACTGTTAACAGAAGGCAAACTTCAATTGGAAAAGAACTTGGGCCTAAAATCCCGGGAAGTGTTAATTGCATCGTTGAGCTGCCAAGAAATGAGTTGGAAGTGAAAGCAGAAGACACAGCACACACACCATGCCTTCTGCTTCTTCCAAACTCTACGCAGATGACGTGAGCCTCCTCGTTGTAACGCTAGACACCAACCCTTTCTTCTGGAGCACTTTCCCCTTCCCCTTCGCCGAGTTCCTCTCCCAAGTACTCGCTTTTCTCAACTCGATCTTGCTCCTTGGCCAGCTCAACCAGGTGATCGTCATCGCCACCGGATGCAACTCTTGCGGCTACATTTACGATTCCACTTCCGATAAGAACCATGGCTCCACCACCGGTACAATGCCCGCGCTTTATTCCAATTTACTTCACAATCTCGATGAGTTTCTCGCTAGGGACCGCCAATTAGATGCCGACGCGGCTCACGCACCGGGAACCGTTCCTTCTTCGCTGTTATCAGGCTCCTTGTCCATGGCGCTTTGTTATATACAGAGAGCTTTTCGTTCGGGACCAATGCCTCCTCAGCCTCGGATTTTATGTTTGCAAGGGGTTGCTGATGGACCAGAACAGTATGTGGCAATCATGAATGCAATTTTCTCTGCACAGCACTCTACAGTTCCTATAGATTCTTGTTATATTGGTTCAAACAATTCTGCATTCCTCCAGCAGGCTTCATACATAACTGGTGGAATATATTACAAGCCTCCCCAATTGGACGGGCTTTATCAATATCTTTCAACAGTGTTTGCAACTGATTTGCATTCTCGTGCATTTTTACGGCTTCCTAAATCTGTGGGTGTGGATTTTCGTGCCTCGTGTTTCTGCCATAAGCAAACAATTGACATGGGCTATGTGTGTTCTGTATGCTTATCCATATTCTGTGAGCACCATGATAAGTGTTCAACCTGTGGGGGTTAGCATGTCAAGAAAAGCTATGAGATGAAGAAGGCAATCCCAGCTGACTAAGATGAAGTTTTCAGCCCTGTATTTGGATAATCTCTTGATAATAACTGCAAATGCGCAATATTTCCATAAGCAAACAATTGACATGGGCTATGTATATTCTGTATGATTATATTCCAGCATGTGTTTCTACAAGGAAAATTACATTTTAGTCTAAAGGCTATATTGGCTACTAAAATTTTCTACCAGAAAAAATACATTTTAGTCTATTGGCTACTAGCCTATGAATTCAATGATAGCTTTTTTTTAATGTATAATATTTAGCCACATACTATTTTACCACAAGATCTCTACTTTTGGATGAATATCTTGGCAATACTTGCTTTTCTTCATTAGTTTGAATTTTTGTTAGTACTAGATTGTGTATGTAGTATGCTCGTTACTGGGTATTGACCTTTGAGAATCCCTGGCTTGAGAGTTTTAAAGGAAAAATGAATTCTTTGTGAATTTATTATCCCGAATAATGTATTTTAAGTGTGTATATAGAAAAGATTAGTTAAAAGCAGACCTGCAATATATGATGAATCTATTGCCTTCGTGTCTTTGTTAATTTGAAAATTAGAAAATTCTGTCAATCATGAGTTGAAGTATCAGAATGAATGTTAACTAAATAGAGAAGCACAAATGGAAATGCACGTTAGAGTGAAACACGAGTGATCAGACCAACATATTTTGGCTTTTCAGGATTCAGGATGTATTATTGAGACCCAGGTTGTTGAATGGGAACTTGGTCAGTCGTTACTGCATTATTATCATTTAGCTCTATTGTAATTTGTCTTTGCACTTTCTGCAGGTCTGTATTTGGCCAGGCTCAACTAGATGCCTCAGCAGCCGACCGGCAAAGAAAGGCTTGATGCATTATGTTGCATCTGAGTGCATAACATATTTTGTCACATTTATCAAGAGAGCTGATCGATTAAAGTTCTTTTCATACCTGTAGCATAATGAAATTTTGAAATCAAATTTCTTTTGCATCTGTCTTAGTGGGAAACTAAGTTTGTCATGGAAATTATTGTAGGCCTATAAAAAGTCAGCATCGATCTGAAGGTTTCATTAGTTGCTTAGCAGGATCTCTCCATATTGAGGCTGCAGAAAAGGCATTTTATCTGAAAGTTTAATTCCCTTTGAAATCCTTGATTTCCAGTATGTTCACATGGCTTTTTGTTCTACCGGAGAAGGCCTACAAGGTTATATTAAAAGGTGTAAAAGACAACGTAATAAATAACGTGGATTGAACACTTGAAATTTGGAGGAAAAACTTTGACACATTTTTTTAAAAATAATATAAAATAAAAAGTAGACATTTTGAAGAAAAAAACTCAAACTTTTAACCTAAGTTATGTTTGAC
>Glyma06g11810.1 sequence type=CDS gene model=Glyma06g11810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCTGCTTCTTCCAAACTCTACGCAGATGACGTGAGCCTCCTCGTTGTAACGCTAGACACCAACCCTTTCTTCTGGAGCACTTTCCCCTTCCCCTTCGCCGAGTTCCTCTCCCAAGTACTCGCTTTTCTCAACTCGATCTTGCTCCTTGGCCAGCTCAACCAGGTGATCGTCATCGCCACCGGATGCAACTCTTGCGGCTACATTTACGATTCCACTTCCGATAAGAACCATGGCTCCACCACCGGTACAATGCCCGCGCTTTATTCCAATTTACTTCACAATCTCGATGAGTTTCTCGCTAGGGACCGCCAATTAGATGCCGACGCGGCTCACGCACCGGGAACCGTTCCTTCTTCGCTGTTATCAGGCTCCTTGTCCATGGCGCTTTGTTATATACAGAGAGCTTTTCGTTCGGGACCAATGCCTCCTCAGCCTCGGATTTTATGTTTGCAAGGGGTTGCTGATGGACCAGAACAGTATGTGGCAATCATGAATGCAATTTTCTCTGCACAGCACTCTACAGTTCCTATAGATTCTTGTTATATTGGTTCAAACAATTCTGCATTCCTCCAGCAGGCTTCATACATAACTGGTGGAATATATTACAAGCCTCCCCAATTGGACGGGCTTTATCAATATCTTTCAACAGTGTTTGCAACTGATTTGCATTCTCGTGCATTTTTACGGCTTCCTAAATCTGTGGGTGTGGATTTTCGTGCCTCGTGTTTCTGCCATAAGCAAACAATTGACATGGGCTATGTGTGTTCTGTATGCTTATCCATATTCTGTGAGCACCATGATAAGTGTTCAACCTGTGGGTCTGTATTTGGCCAGGCTCAACTAGATGCCTCAGCAGCCGACCGGCAAAGAAAGGCTTGA >Glyma06g11810.2 sequence type=CDS gene model=Glyma06g11810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCTGCTTCTTCCAAACTCTACGCAGATGACGTGAGCCTCCTCGTTGTAACGCTAGACACCAACCCTTTCTTCTGGAGCACTTTCCCCTTCCCCTTCGCCGAGTTCCTCTCCCAAGTACTCGCTTTTCTCAACTCGATCTTGCTCCTTGGCCAGCTCAACCAGGTGATCGTCATCGCCACCGGATGCAACTCTTGCGGCTACATTTACGATTCCACTTCCGATAAGAACCATGGCTCCACCACCGGTACAATGCCCGCGCTTTATTCCAATTTACTTCACAATCTCGATGAGTTTCTCGCTAGGGACCGCCAATTAGATGCCGACGCGGCTCACGCACCGGGAACCGTTCCTTCTTCGCTGTTATCAGGCTCCTTGTCCATGGCGCTTTGTTATATACAGAGAGCTTTTCGTTCGGGACCAATGCCTCCTCAGCCTCGGATTTTATGTTTGCAAGGGGTTGCTGATGGACCAGAACAGTATGTGGCAATCATGAATGCAATTTTCTCTGCACAGCACTCTACAGTTCCTATAGATTCTTGTTATATTGGTTCAAACAATTCTGCATTCCTCCAGCAGGCTTCATACATAACTGGTGGAATATATTACAAGCCTCCCCAATTGGACGGGCTTTATCAATATCTTTCAACAGTGTTTGCAACTGATTTGCATTCTCGTGCATTTTTACGGCTTCCTAAATCTGTGGGTGTGGATTTTCGTGCCTCGTGTTTCTGCCATAAGCAAACAATTGACATGGGCTATGTGTGTTCTGTATGCTTATCCATATTCTGTGAGCACCATGATAAGTGTTCAACCTGTGGGGGTTAG
>Glyma06g11810.1 sequence type=predicted peptide gene model=Glyma06g11810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVIATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPSSLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGVADGPEQYVAIMNAIFSAQHSTVPIDSCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQLDASAADRQRKA* >Glyma06g11810.2 sequence type=predicted peptide gene model=Glyma06g11810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVIATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPSSLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGVADGPEQYVAIMNAIFSAQHSTVPIDSCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDFRASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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