Report for Sequence Feature Glyma06g11760
Feature Type: gene_model
Chromosome: Gm06
Start: 9061484
stop: 9065839
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g11760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G08290 AT
Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein | chr4:5239088-5240861 FORWARD LENGTH=384
SoyBase E_val: 6.00E-122 ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
PF00892 PFAM
EamA-like transporter family
JGI ISS
UniRef100_G7J315 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=1 Tax=Medicago truncatula RepID=G7J315_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KA86 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA86_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g11760
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g11760
Paralog Evidence Comments
Glyma04g42990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g11760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g111900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g11760
Coding sequences of Glyma06g11760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g11760.1 sequence type=CDS gene model=Glyma06g11760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTACGTGGTTCACAAATGCAAGGCCGTATCTGCTGTTAGTGGCGGTTCAATTTGGCTCAGCAGGCATGTTCATATTTGCGATGGATGCTATAAAGAAGGGTATGAGCCATTACGTGTTCATCGTCTATCGTAATGCCATCGCCTCTGTATCTCTTGCTCCCTTCGCATTCGTTTTAGAAAGGAAAATTAGGCCCAAGATGACTTTCCGGGTATTTTCAGAGATTATGGCACTGGCTTTTTTCGAAATAATACTGGACCAGTGCTTCGCCCTCTTGGGCATGAAATTCACGTCGGCATCTTTCCTATCTGCTGTTATGAACTCCGCACCCTCTGTTACTTTTGTGATGGCTGTCATTTTAAGAATGGAGCACATGAAGATTAAGGAGGTGGCATGTCAAGCCAAAGTGATTGGCACAGTAGTAACATTTGGAGGCACCTTGCTAATGGCACTGTACAAAGGCCCCGTGCTTAGTTTTATGCGATCATCAACTAGCCATGCTAGCCAACCTGAGAATGTGGTCACTCAAACTGGTAACCATTGGGTCATAGGGACATTGTTCCTCCTCATTGGTTGTGCTGGCTTTTCTGCATTTTACATATTACAGGCCATAACATTGAGAAAATACCCAGCAGAGATGTCGCTGGCCACTTGGGTTTGCTTTGTAGGAGCACTTCAAAGCTCTATTGTTGCAATCTTCGCAGAACGCCACCACCCTCATGCTTGGTCCCTTGGTTGGGATACACGACTCTTTGCTCCTGCTTACGCGGGAATAGTTACATCTGGAGTTCAGTATTACATACAAGGCATGGTCTCAAAAATTATGGGCCCAGTTATTGTGACTGCTTTTAATCCCCTGCGTATGATCATTGTTACGGCCTTGGCCTGCATCATCTTATCCGAGCAACTCTTCCTTGGAAGTATTATTGGAGCAGTAGTTGTGGTTCTTGGGCTTTATCTAGTTGTGTGGGGAAAAGCTAAAGAACGCAGAGGTATTATGACACCGTCCCCTGCAGAAAATAACTTTCCGGAAGACCAACGACAGCTACCAGTCATAGCTCCAAGGAATGATAACATTAATACTAATAAGGCTTAA
Predicted protein sequences of Glyma06g11760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g11760.1 sequence type=predicted peptide gene model=Glyma06g11760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTWFTNARPYLLLVAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASVSLAPFAFVLERKIRPKMTFRVFSEIMALAFFEIILDQCFALLGMKFTSASFLSAVMNSAPSVTFVMAVILRMEHMKIKEVACQAKVIGTVVTFGGTLLMALYKGPVLSFMRSSTSHASQPENVVTQTGNHWVIGTLFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFVGALQSSIVAIFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVSKIMGPVIVTAFNPLRMIIVTALACIILSEQLFLGSIIGAVVVVLGLYLVVWGKAKERRGIMTPSPAENNFPEDQRQLPVIAPRNDNINTNKA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
