Glyma06g11680 - SoyBase

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Report for Sequence Feature Glyma06g11680

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8992877
stop:	8997349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G44835	AT	Annotation by Michelle Graham. TAIR10: YbaK/aminoacyl-tRNA synthetase-associated domain \| chr1:16939909-16942337 FORWARD LENGTH=307	SoyBase	E_val: 8.00E-124	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04073	PFAM	YbaK / prolyl-tRNA synthetases associated domain	JGI		ISS
UniRef100_I1KA77	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA77_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9M3Y5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 25.7 kDa protein n=1 Tax=Cicer arietinum RepID=Q9M3Y5_CICAR	SoyBase	E_val: 1.00E-123	ISS

Expression Patterns of Glyma06g11680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g11680 not represented in the dataset	Glyma06g11680 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11680

Paralog	Evidence	Comments
Glyma04g43051	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g111200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g11680

Limit To All Plant Sequences

>Glyma06g11680.2   sequence type=transcript   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTTTCGTTTCGAAGGCAGCACCGCACTTGTTCTGCTCCGCCGCGATTGCAATCGTTTCCACTCCCGCCGCTGATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGTCAAGGACGAAAATATAAAGTTACACGGGGAGCAGCTCGGTACTGTGTTATCTGACAAATTACAGAAAAACCTCAATGCAGAGTTCAAGAGCCTTGCTATGATATTTAAGAACACAGCATATACGGAAGGGTTCCATGCTGGTACTCATTACAGGCCCCCGCTCATGTGAAGCACAGGATGATTTACGATTTGCTGCCAGGAAAGTAAAAGAGGAACCAAAATTTTAACTCTAGTTGTTCAATGTTTAGTTTGTGATAACACACCATGCATTGTTTGAGCATTCATATATATTCTGGGAAATGTTTGTTATAGAATAGATGATTTGAAACGATTTGATCAATGAAAAAAAGTCAACATTAAGTCGGTCATTTG

>Glyma06g11680.3   sequence type=transcript   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGGGGGTCATTGAGTCGCTGATATAAAAACCAGACCCATAATACACACTGTTTTCGGGTTTCGTTTCGAAGGCAGCACCGCACTTGTTCTGCTCCGCCGCGATTGCAATCGTTTCCACTCCCGCCGCTGATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGTGTTATCTCAGCGGCTTGGTTTGGGAAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGTCAAGGACGAAAATATAAAGTTACACGGGGAGCAGCTCGGTACTGTGTTATCTGACAAATTACAGAAAAACCTCAATGCAGAGTTCAAGAGCCTTGCTATGATATTTAAGAACACAGCATATACGGAAGGGTTCCATGCTGGTACTCATTACAGGCCCCCGCTCATGTGAAGCACAGGATGATTTACGATTTGCTGCCAGGAAAGTAAAAGAGGAACCAAAATTTTAACTCTAGTTGTTCAATGTTTAGTTTGTGATAACACACCATGCATTGTTTGAGCATTCATATATATTCTGGGAAATGTTTGTTATAGAATAGATGATTTGAAACGATTTGATCAATGAAAAAAAGTCAACATTAAGTCGGTCATTTGAAAACAAGGGTAAACTACTTTGAAGATTCTAAAAATAATAGTAATGATTTAGTTTTTTTAAAATAAAATAATGAACTTTATACTTAGTTACA

>Glyma06g11680.4   sequence type=transcript   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTTTCGTTTCGAAGGCAGCACCGCACTTGTTCTGCTCCGCCGCGATTGCAATCGTTTCCACTCCCGCCGCTGATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGTGTTATCTCAGCGGCTTGGTTTGGGAAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGGTGAAGAATCTTGGTCATACAGGTCAAGGACGAAAATATAAAGTTACACGGGGAGCAGCTCGGTACTGTGTTATCTGACAAATTACAGAAAAACCTCAATGCAGAGTTCAAGAGCCTTGCTATGATATTTAAGAACACAGCATATACGGAAGGGTTCCATGCTGGTACTCATTACAGGCCCCCGCTCATGTGAAGCACAGGATGATTTACGATTTGCTGCCAGGAAAGTAAAAGAGGAACCAAAATTTTAACTCTAGTTGTTCAATGTTTAGTTTGTGATAACACACCATGCATTGTTTGAGCATTCATATATATTCTGGGAAATGTTTGTTATAGAATAGATGATTTGAAACGATTTGATCAATGAAAAAAAGTCAACATTAAGTCGGTCATTTG

Coding sequences of Glyma06g11680

Limit To All Plant Sequences

>Glyma06g11680.1   sequence type=CDS   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGTGTTATCTCAGCGGCTTGGTTTGGGAAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGGTTAGTAAATTTAAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGTCAAGGACGAAAATATAAAGTTACACGGGGAGCAGCTCGGTACTGTGTTATCTGACAAATTACAGAAAAACCTCAATGCAGAGTTCAAGAGCCTTGCTATGATATTTAAGAACACAGCATATACGGAAGGGTTCCATGCTGGTACTCATTACAGGCCCCCGCTCATGTGA

>Glyma06g11680.2   sequence type=CDS   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGTCAAGGACGAAAATATAAAGTTACACGGGGAGCAGCTCGGTACTGTGTTATCTGACAAATTACAGAAAAACCTCAATGCAGAGTTCAAGAGCCTTGCTATGATATTTAAGAACACAGCATATACGGAAGGGTTCCATGCTGGTACTCATTACAGGCCCCCGCTCATGTGA

>Glyma06g11680.3   sequence type=CDS   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGTGTTATCTCAGCGGCTTGGTTTGGGAAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGTCAAGGACGAAAATATAAAGTTACACGGGGAGCAGCTCGGTACTGTGTTATCTGACAAATTACAGAAAAACCTCAATGCAGAGTTCAAGAGCCTTGCTATGATATTTAAGAACACAGCATATACGGAAGGGTTCCATGCTGGTACTCATTACAGGCCCCCGCTCATGTGA

>Glyma06g11680.4   sequence type=CDS   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTTCTCAAAGGAACAGCTTCTTGCGCGGTTAAAGGAGCTTCAGGTTCCATTTTCCCAGTATGAGCATCCTGTTGTTTTGACCGTCGACGCTCAGGCTCAATATGTTGGACATTTGGGGGGTGGCCTCAGCAAGAATTTGTTTCTCAAGGACAAGAAAAGCAGGTTGTATATTGTTTCTGCTTTAGCTGGTACCAAAGTAGATCTCAAAGTGTTATCTCAGCGGCTTGGTTTGGGAAAAGGTGGTCTCAGAATGGCACCTGAGGAGGCTTTAGGTGAAGTACTTCAGGTACCCTTGGGTTGTGTCACTCCATTTGCACTTGTGAATGAATCAGCACGAGATGTTTCACTGCTATTGGATCAAGGGTTCAAGTCTCAGAAGCACTGCTTCTTCCATCCACTGTCGAATGACATGTCTATATCTCTAAATGCATGTGATCTTGACAAGTTTCTTAAATCAATTGGAAGAAATCCATCATACGTTGATTTGGAGACCAATCCTACAGTGGGGAAAGATCAACCCCCTGATCTAGCTGCACTAGTTCCATCTGGTTCCATAGTTTTACCCGATCAACCCCAAAAACAATCTTCTTCACAGGTTCCTAAGGATGCAAACCATGTTTCTGTGGATAATGGAGCCAATACAGTTTCAGCTAAAGTTGTCAAGCCATCCTCTGGTGGGAAAAATACAAAGGGGACACCAGCAAAAAATGTTAATTCATCAGGCTCCTTTGCAGATGCTGGGCAATTCGTTGAAGAGATATTGCAAAAAACATCACAATTATTGCTTTCAGAGGGTGAAGAATCTTGGTCATACAGGTCAAGGACGAAAATATAA

Predicted protein sequences of Glyma06g11680

Limit To All Plant Sequences

>Glyma06g11680.1   sequence type=predicted peptide   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIVSALAGTKVDLKVLSQRLGLGKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLLDQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLEVSKFKTNPTVGKDQPPDLAALVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSSGGKNTKGTPAKNVNSSGSFADAGQFVEEILQKTSQLLLSEVKDENIKLHGEQLGTVLSDKLQKNLNAEFKSLAMIFKNTAYTEGFHAGTHYRPPLM*

>Glyma06g11680.2   sequence type=predicted peptide   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIVSALAGTKVDLKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLLDQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAALVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSSGGKNTKGTPAKNVNSSGSFADAGQFVEEILQKTSQLLLSEVKDENIKLHGEQLGTVLSDKLQKNLNAEFKSLAMIFKNTAYTEGFHAGTHYRPPLM*

>Glyma06g11680.3   sequence type=predicted peptide   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIVSALAGTKVDLKVLSQRLGLGKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLLDQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAALVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSSGGKNTKGTPAKNVNSSGSFADAGQFVEEILQKTSQLLLSEVKDENIKLHGEQLGTVLSDKLQKNLNAEFKSLAMIFKNTAYTEGFHAGTHYRPPLM*

>Glyma06g11680.4   sequence type=predicted peptide   gene model=Glyma06g11680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFSKEQLLARLKELQVPFSQYEHPVVLTVDAQAQYVGHLGGGLSKNLFLKDKKSRLYIVSALAGTKVDLKVLSQRLGLGKGGLRMAPEEALGEVLQVPLGCVTPFALVNESARDVSLLLDQGFKSQKHCFFHPLSNDMSISLNACDLDKFLKSIGRNPSYVDLETNPTVGKDQPPDLAALVPSGSIVLPDQPQKQSSSQVPKDANHVSVDNGANTVSAKVVKPSSGGKNTKGTPAKNVNSSGSFADAGQFVEEILQKTSQLLLSEGEESWSYRSRTKI*

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