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Report for Sequence Feature Glyma06g11640

Feature Type:gene_model
Chromosome:Gm06
Start:8972113
stop:8974813
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g11640
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77670AT Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:29189043-29190901 REVERSE LENGTH=440 SoyBaseE_val: 0ISS
GO:0006530GO-bp Annotation by Michelle Graham. GO Biological Process: asparagine catabolic process SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0019465GO-bp Annotation by Michelle Graham. GO Biological Process: aspartate transamidation SoyBaseN/AISS
GO:0019554GO-bp Annotation by Michelle Graham. GO Biological Process: glutamate catabolic process to oxaloacetate SoyBaseN/AISS
GO:0042218GO-bp Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008483GO-mf Annotation by Michelle Graham. GO Molecular Function: transaminase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
GO:0016847GO-mf Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity SoyBaseN/AISS
GO:0030170GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding SoyBaseN/AISS
KOG0257 KOG Kynurenine aminotransferase, glutamine transaminase K JGI ISS
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI ISS
PTHR11751:SF125Panther SUBFAMILY NOT NAMED JGI ISS
PF00155PFAM Aminotransferase class I and II JGI ISS
UniRef100_G7J330UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kynurenine-oxoglutarate transaminase n=1 Tax=Medicago truncatula RepID=G7J330_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KA75UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA75_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g11640
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11640
ParalogEvidenceComments
Glyma04g43080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11640 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g111000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g11640
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g11640
>Glyma06g11640.1   sequence type=CDS   gene model=Glyma06g11640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTCACGCCTTCCTCCAAATTCTTAGGCTTTTCAAATCACTTCCACTCCCTTCTCGCACCCTCTTTCTCTCCGACCCCAAAGTTCTCATCTTCCTTTTCCGCCACCATGTCCACTCTTTCCACTCAGAACGACACCGTCACCCACAAAACGCAGCAACCTTTGCAGATTGCAAAGCGCTTAGAGAAATTTCAGACAACAATCTTCACTCAAATGAGCTTGCTTGCCATCAAACATGGGGCCATAAACCTTGGTCAAGGCTTTCCCAACTTTGATGGTCCAGAATTTGTAAAGGAAGCAGCGATTCAGGCAATCAGGGATGGGAAAAATCAGTATGCCCGGGGTTATGGAGTTCCAGACCTGAACATTGCCATTGCTGAGAGATTTAAGAAAGATACTGGACTTGTGGTAGACCCTGAAAAGGAAATTACTGTCACATCTGGATGCACAGAAGCAATTGCTGCAACTATGATAGGATTAATAAATCCTGGTGATGAGGTTATTATGTTTGCTCCTTTTTATGATTCTTATGAGGCCACTTTGTCCATGGCTGGTGCAAAAGTAAAAGGCATCACTTTGCGCCCTCCAGATTTTGCTGTCCCTCTTGAAGAGTTGAAGTCCACCATCTCGAAGAATACCCGTGCCATTCTTATAAACACTCCTCACAACCCTACTGGAAAGATGTTCACTCGTGAGGAGCTCAATTGCATTGCATCTCTTTGCATTGAGAATGATGTTCTGGTTTTCACTGATGAAGTTTATGACAAGTTGGCTTTTGATATGGAGCACATATCGATGGCTTCTTTGCCTGGAATGTTCGAAAGGACAGTGACATTGAACTCCTTGGGGAAGACATTCTCCTTAACAGGATGGAAGATTGGTTGGGCCATAGCACCCCCACACTTATCATGGGGAGTGCGACAGGCACACGCTTTCCTCACTTTCGCAACTGCCCATCCTTTTCAGTGTGCTGCTGCAGCGGCTCTGAGAGCACCAGACTCTTACTATGTAGAGCTGAAGAGGGATTATATGGCAAAGAGAGCTATTTTGATTGAAGGATTGAAGGCTGTTGGCTTCAAGGTATTCCCATCCAGTGGAACCTACTTTGTGGTTGTAGATCACACCCCTTTTGGACTGGAAAATGATGTTGCATTTTGTGAATATCTAGTTAAGGAAGTGGGAGTGGTGGCAATCCCTACCAGTGTGTTTTACTTGAATCCAGAAGAGGGAAAGAATCTAGTCAGATTTACTTTCTGCAAGGATGAGGAAACTATTAGGTCTGCTGTTGAGAGGATGAAAGCAAAGCTTAGAAAATGA
Predicted protein sequences of Glyma06g11640
>Glyma06g11640.1   sequence type=predicted peptide   gene model=Glyma06g11640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFTPSSKFLGFSNHFHSLLAPSFSPTPKFSSSFSATMSTLSTQNDTVTHKTQQPLQIAKRLEKFQTTIFTQMSLLAIKHGAINLGQGFPNFDGPEFVKEAAIQAIRDGKNQYARGYGVPDLNIAIAERFKKDTGLVVDPEKEITVTSGCTEAIAATMIGLINPGDEVIMFAPFYDSYEATLSMAGAKVKGITLRPPDFAVPLEELKSTISKNTRAILINTPHNPTGKMFTREELNCIASLCIENDVLVFTDEVYDKLAFDMEHISMASLPGMFERTVTLNSLGKTFSLTGWKIGWAIAPPHLSWGVRQAHAFLTFATAHPFQCAAAAALRAPDSYYVELKRDYMAKRAILIEGLKAVGFKVFPSSGTYFVVVDHTPFGLENDVAFCEYLVKEVGVVAIPTSVFYLNPEEGKNLVRFTFCKDEETIRSAVERMKAKLRK*






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