SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G77670 | AT | Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr1:29189043-29190901 REVERSE LENGTH=440 | SoyBase | E_val: 0 | ISS |
| GO:0006530 | GO-bp | Annotation by Michelle Graham. GO Biological Process: asparagine catabolic process | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0019465 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aspartate transamidation | SoyBase | N/A | ISS |
| GO:0019554 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutamate catabolic process to oxaloacetate | SoyBase | N/A | ISS |
| GO:0042218 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008483 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transaminase activity | SoyBase | N/A | ISS |
| GO:0016740 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity | SoyBase | N/A | ISS |
| GO:0016847 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG0257 | KOG | Kynurenine aminotransferase, glutamine transaminase K | JGI | ISS | |
| PTHR11751 | Panther | SUBGROUP I AMINOTRANSFERASE RELATED | JGI | ISS | |
| PTHR11751:SF125 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00155 | PFAM | Aminotransferase class I and II | JGI | ISS | |
| UniRef100_G7J331 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartate aminotransferase n=1 Tax=Medicago truncatula RepID=G7J331_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I3SFE6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3SFE6_LOTJA | SoyBase | E_val: 0 | ISS |
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Glyma06g11625 not represented in the dataset |
Glyma06g11625 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g110900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11625.1 sequence type=CDS gene model=Glyma06g11625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGACTGTTTCCACTGAAAATGAGGCCACAATCCAGAAAACGCATTATCCTTTGCAGGTTGCGAAGCGCTTAGAGAAGTTCCAAAGAGATTGGGGAGGTGCAACCAACCAGAAAGATGGAATCATAAACCTTGGACGAGGCTTTCCCAACTTTGATGGTCCAGAATTTATAAAGGAAGCAGCAATTCAGGCCATCAGAGATGGGAAAAATCAGTATGCACGAGGTTTTGGAGTTCCAGAACTGAACATTGCTATTGCTGATAGATTTAAGAAGGATACTGGAATAGTGGTAGACCCTGATAAGGAAGTTACTGTTATCCTGTTTACTCCTTTATATGATTGTTATGAAGCCAATTTAACCATGGCTGGTGCAAAAATAAAAAGCATCTCTTTGCACCCTCCAGATTTTGCTGTCCCAATTGAAAAATTGAAGTCCATCGTGTCAAGTAATACACGTGCCATTCTTATAAATACTCCTCACAACCCTACTGGAAAGATGTTCACTTTGGAAGAGCTCAATGCTATTGCATCACTTTGCATTGAGAATGATGTTCTAGTTTTTGCTGATGAGGTTTATCACAAGTTGGCATTTGATGTGGAGCACATTTCAATAGCTTCTTTGCCTGGAATGTTTGAAAGGACAGTGACAATGAACTCAATGGCAAAGACATTCAACTTAACAGGATGGAAGATTGGTTGGGCCATAGCACCCTCACACTTATCATGGGGAGTGCGACAGGCACACGCTTTCGTTACTTTTTCGAGCCCCAATGCTCTGCAGTGTGCTGCTGCAGTAGCTCTTAGAGCACCAGACTCTTACTATGTAGAGCTGAAGAGGGATTATATAGCTAAGAGGGCTATTTTGGTGGAAGGATTAAAGGCCGTTGGCTTTAAGGTATTCCCACCCAATGGAACATTCTTTGTGTTAGCAGATCACACCCATTTTGGAATGGAAAATGATGTTGCATTTTGTAAATATCTGCATAAGGAGGTGGGGGTGGTGGCAATCCCTTGCAGTGTGTTTTGCTTGAATCCAGAAGAGGGAAAGAATCTAGTCAGATTTGTTTTCTGCAAGGATGAGGAAACTCTTAGGGCCGCGGTTGAGAGGATGAAGGAGAAGCTTTGA
>Glyma06g11625.1 sequence type=predicted peptide gene model=Glyma06g11625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTVSTENEATIQKTHYPLQVAKRLEKFQRDWGGATNQKDGIINLGRGFPNFDGPEFIKEAAIQAIRDGKNQYARGFGVPELNIAIADRFKKDTGIVVDPDKEVTVILFTPLYDCYEANLTMAGAKIKSISLHPPDFAVPIEKLKSIVSSNTRAILINTPHNPTGKMFTLEELNAIASLCIENDVLVFADEVYHKLAFDVEHISIASLPGMFERTVTMNSMAKTFNLTGWKIGWAIAPSHLSWGVRQAHAFVTFSSPNALQCAAAVALRAPDSYYVELKRDYIAKRAILVEGLKAVGFKVFPPNGTFFVLADHTHFGMENDVAFCKYLHKEVGVVAIPCSVFCLNPEEGKNLVRFVFCKDEETLRAAVERMKEKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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