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Feature Type: gene_model Chromosome: Gm06 Start: 8921993 stop: 8923257 Source: JGI Version: Wm82.a1.v1.1 High confidence: yes

A newer version of this gene model can be found here:

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36020	AT	Annotation by Michelle Graham. TAIR10: cold shock domain protein 1 | chr4:17043443-17044342 REVERSE LENGTH=299	SoyBase	E_val: 2.00E-31	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cold acclimation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010501	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA secondary structure unwinding	SoyBase	N/A	ISS
GO:0032508	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA duplex unwinding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003690	GO-mf	Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding	SoyBase	N/A	ISS
GO:0003697	GO-mf	Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR11544	Panther	COLD SHOCK DOMAIN CONTAINING PROTEINS	JGI		ISS
PTHR11544:SF12	Panther	Y BOX BINDING PROTEIN	JGI		ISS
PF00098	PFAM	Zinc knuckle	JGI		ISS
PF00313	PFAM	Cold-shock' DNA-binding domain	JGI		ISS
UniRef100_B9RJ51	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cold shock protein, putative n=1 Tax=Ricinus communis RepID=B9RJ51_RICCO	SoyBase	E_val: 3.00E-37	ISS
UniRef100_I1KA68	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA68_SOYBN	SoyBase	E_val: 2.00E-115	ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Paralog	Evidence	Comments
Glyma04g43130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g110400	Wm82.a2.v1	IGC	As supplied by JGI

Schmutz et al. 2010   Genome sequence of the palaeopolyploid soybean   Nature 2010, 463:178-183