|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G77780 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase superfamily protein | chr1:29248437-29249528 REVERSE LENGTH=363 | SoyBase | E_val: 2.00E-104 | ISS |
GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
PTHR16631 | Panther | GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED | JGI | ISS | |
PF00332 | PFAM | Glycosyl hydrolases family 17 | JGI | ISS | |
UniRef100_A2Q1U4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=A2Q1U4_MEDTR | SoyBase | E_val: 1.00E-119 | ISS |
UniRef100_I1KA45 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA45_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma06g11390 not represented in the dataset |
Glyma06g11390 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.06g108700 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11390.1 sequence type=CDS gene model=Glyma06g11390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTCCAATGTCGGTTTAGCGCTGTTCGTTATGACAACGATTCTACTAATTCAACAGTTTCCCCTTACAAGTGCTCAATCAATCGGTGTGAATCTTGGCTTAACTGGAGACAACCTTCCTTCCCCAAAAGAAATTGTGGAACTCTACGAGAAATATCATATCAAATTCATCAGAATCTTTGAGCCAAGGCATGACATTCTTGAAGCCCTTCGAGGTAAACCTTTGGTGCTTGTCATTGGCACAAAAGATGAAGACGTACAAACCATAGCACAGGACCAAAACGCAGCCAACACATGGGTCCAAACCAATGTCATTCCATACATAAAGGACGTTAATTTTCGGTACATAATCATAGGTAACGAGGTGACACCAGGGCCTATAGCAGCCTACGTTGCAAAGGGTATTCAAAATATGATCAATGCACTCACCAATGCTGGCATACACAAAGACATTAAGGTATCTGCAGTTCTTAAAGGTACTGTCTTAGCATCTTCTTATCCACCTTCAGCTGGAACATTCACCAATGAAACAACCAACATTATCAAACAGATTGCAACAATTTTGTTGCAACATGGTTCACCCATGATGATCAACTCGTACCCTTACCTTGCATATTCCTCTGACCCACAACATGTTTCTCTTGACTATGCACTCTTTAAGTCAACAAGCCCTGTGGTCACTGATGGGAGTTACAAGTACTACAATCTGTTTGATGCCATGCTTGATGCTTATCATGCTGCTTTTGAGAAGATTGGTGTGTCGAACCTAACACTTGTTGTGTCTGAAACTGGTTGGCCTAGTGCGGGTTATGAGCCTTACACAAGCAAATTGAATTCTCAAGCTTACAACAAAAACTTGGTGCAGCATGTGAGAGGAGGAAAAGGGACACCAAGGAGGCCAGACCAGAGTTTGAATGTGTTCATTTTTGAAATGTTCAATGAAGATCTTAAGCAAGCTGGAATTGAGCACAACTTTGGAGTCTTCTATCCCAATAAGAAACCAGTGTATCCGTTGTTTTAA
>Glyma06g11390.1 sequence type=predicted peptide gene model=Glyma06g11390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSNVGLALFVMTTILLIQQFPLTSAQSIGVNLGLTGDNLPSPKEIVELYEKYHIKFIRIFEPRHDILEALRGKPLVLVIGTKDEDVQTIAQDQNAANTWVQTNVIPYIKDVNFRYIIIGNEVTPGPIAAYVAKGIQNMINALTNAGIHKDIKVSAVLKGTVLASSYPPSAGTFTNETTNIIKQIATILLQHGSPMMINSYPYLAYSSDPQHVSLDYALFKSTSPVVTDGSYKYYNLFDAMLDAYHAAFEKIGVSNLTLVVSETGWPSAGYEPYTSKLNSQAYNKNLVQHVRGGKGTPRRPDQSLNVFIFEMFNEDLKQAGIEHNFGVFYPNKKPVYPLF*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||