SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36980 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:14025084-14026727 FORWARD LENGTH=135 | SoyBase | E_val: 1.00E-78 | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3393 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR13180 | Panther | SMALL MEMBRANE PROTEIN-RELATED | JGI | ISS | |
| PF05255 | PFAM | Uncharacterised protein family (UPF0220) | JGI | ISS | |
| UniRef100_B7FGM3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Salt tolerant protein n=1 Tax=Medicago truncatula RepID=B7FGM3_MEDTR | SoyBase | E_val: 2.00E-86 | ISS |
| UniRef100_C6T022 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T022_SOYBN | SoyBase | E_val: 3.00E-90 | ISS |
|
Glyma06g11380 not represented in the dataset |
Glyma06g11380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g43300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g108600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11380.4 sequence type=transcript gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAAACTTGGTCTTGTGTACTGATACTCTTCTTTTCCCTTTATATCCTCATGTAATCGAACGTGTTAGTGAAATGCCCAATGCATAATAATTGCATATAAAAACTAAACAGTATTGTTGATTAGGTGTGACAGAACAGCAGAAGGGAAGAAGATGGACTTACTGGAGTTATGGGCAATTTTCGGCCCCGGCGTCGCCGGCGCTGTCTTCGGCGCCGGATGGTGGATCTGGCTTGACGCGGTCGTCTGCAGCTTGGTCACCGTTCCCTTCCTTCACTACCTTCCCGGAATTTTCGCATCTTTTGCGGCTTTGATGTTCAATTGCGTTAGAAAAGAAGACATCGATTATTCTCCATATGACGAAGGCGAGTGGAGACTGAAGCTGTGGCTCTTCATTGCATATGTTGTATCCTTTGTTTCTTTAGCTGGATCAGCTGGCCTACTGATCCAAGATTCACTTGATAAATCTGCCCCTTCAGTTTGGACTGGAGTTGCAGGTGTTTTGCAGTGTGTTTTTGTCTTGATCAGTGGACTGGTATATTGGACTTCTCATCCTGAATAAGTTGCACCAAGATATGACTCGGAGCTTCAAACTATACCAGTCGCTTGGTGTTGACATCTATGAAGATTCCCCCCACCCCTCGTTTTCTCAGTAGTTTGAACTCACAGCATACAGGAAAGGAAACCCTTTATGGTTATAACTGAGAATAACTCTGTTGACTGCATCTATGTTTTGACTAGAAAAACTTACTCGAGAATTCAGATTGGTTATGTACGAAAGTTTGTGTAAATAACATTATTCGCTTAACAGTTGCTTTTTCTTCTTTGAAAAAAATACATAAAAGGAAGGGGCCAAAGCCCGAGCAAAAAAATTAAAATTCCAGCTAAAGTGCTAAATGAGGGTATTGAAAGTTCATGCATACTCAGTTTGAGTCTAACTGAGTATGCATGGACTTTCCACACCAGTTTTATGGAAGGGCAAAACAGATTGCGCAATCCGTAAGCTTCATACGGATTGTCCAATCCGTAAGAGGTTTACGGATTATCCAATCTGTATCAGTTTTATGGAAGGGTAAATGGGAATTGCTCTAGTTTGCTGGGTGTACTAGCAATTGTGGTGGGTGCGCGTAGCAACAGCCTGACATTTTGTGGATCTTATGTTAATTCATGTTCTGCTTAATGCACTATGTATTGCCATGGCCCATATCTATAAAATTAGTCTCAACATTCTTTCTTGATCATGATCATAGATT >Glyma06g11380.5 sequence type=transcript gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTAAACTTGGTCTTGTGTACTGATACTCTTCTTTTCCCTTTATATCCTCATGTAATCGAACGTGTTAGTGAAATGCCCAATGCATAATAATTGCATATAAAAACTAAACAGTATTGTTGATTAGGTGTGACAGAACAGCAGAAGGGAAGAAGATGGACTTACTGGAGTTATGGGCAATTTTCGGCCCCGGCGTCGCCGGCGCTGTCTTCGGCGCCGGATGGTGGATCTGGCTTGACGCGGTCGTCTGCAGCTTGGTCACCGTTCCCTTCCTTCACTACCTTCCCGGAATTTTCGCATCTTTTGCGGCTTTGATGTTCAATTGCGTTAGAAAAGAAGACATCGATTATTCTCCATATGACGAAGGCGAGTGGAGACTGAAGCTGTGGCTCTTCATTGCATATGTTGTATCCTTTGTTTCTTTAGCTGGATCAGCTGGCCTACTGATCCAAGATTCACTTGATAAATCTGCCCCTTCAGTTTGGACTGGAGTTGCAGGTGTTTTGCAGTGTGTTTTTGTCTTGATCAGTGGACTGGTATATTGGACTTCTCATCCTGAATAAGTTGCACCAAGATATGACTCGGAGCTTCAAACTATACCAGGTTATGCCCACCCATGTATTGTCTTGTTTGTTTTATGTGATGTTAAGTCGCTGGCTTCATGTAAATCAGTAAATGTAAATTGTGCTAACAATCTTGAGCCTCTGGGTAGATTTATCTCTCTTGTTTCGTATAGTTGATCAAGATCTATTACCAATTTCAGTCGCTTGGTGTTGACATCTATGAAGATTCCCCCCACCCCTCGTTTTCTCAGTAGTTTGAACTCACAGCATACAGGAAAGGAAACCCTTTATGGTTATAACTGAGAATAACTCTGTTGACTGCATCTATGTTTTGACTAGAAAAACTTACTCGAGAATTCAGATTGGTTATGTACGAAAGTTTGTGTAAATAACATTATTCGCTTAACAGTTGCTTTTTCTTCTTTGAAAAAAATACATAAAAGGAAGGGGCCAAAGCCCGAGCAAAAAAATTAAAATTCCAGCTAAAGTGCTAAATGAGGGTATTGAAAGTTCATGCATACTCAGTTTGAGTCTAACTGAGTATGCATGGACTTTCCACACCAGTTTTATGGAAGGGCAAAACAGATTGCGCAATCCGTAAGCTTCATACGGATTGTCCAATCCGTAAGAGGTTTACGGATTATCCAATCTGTATCAGTTTTATGGAAGGGTAAATGGGAATTGCTCTAGTTTGCTGGGTGTACTAGCAATTGTGGTGGGTGCGCGTAGCAACAGCCTGACATTTTGTGGATCTTATGTTAATTCATGTTCTGCTTAATGCACTATGTATTGCCATGGCCCATATCTATAAAATTAGTCTCAACATTCTTTCTTGATCATGATCATAGATT
>Glyma06g11380.2 sequence type=CDS gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTACTGGAGTTATGGGCAATTTTCGGCCCCGGCGTCGCCGGCGCTGTCTTCGGCGCCGGATGGTGGATCTGGCTTGACGCGGTCGTCTGCAGCTTGGTCACCGTTCCCTTCCTTCACTACCTTCCCGGAATTTTCGCATCTTTTGCGGCTTTGATGTTCAATTGCGTTAGAAAAGAAGACATCGATTATTCTCCATATGACGAAGGCGAGTGGAGACTGAAGCTGTGGCTCTTCATTGCATATGTTGTATCCTTTGTTTCTTTAGCTGGATCAGCTGGCCTACTGATCCAAGATTCACTTGATAAATCTGCCCCTTCAGTTTGGACTGGAGTTGCAGGTGTTTTGCAGTGTGTTTTTGTCTTGATCAGTGGACTGGTATATTGGACTTCTCATCCTGAATAA >Glyma06g11380.4 sequence type=CDS gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTACTGGAGTTATGGGCAATTTTCGGCCCCGGCGTCGCCGGCGCTGTCTTCGGCGCCGGATGGTGGATCTGGCTTGACGCGGTCGTCTGCAGCTTGGTCACCGTTCCCTTCCTTCACTACCTTCCCGGAATTTTCGCATCTTTTGCGGCTTTGATGTTCAATTGCGTTAGAAAAGAAGACATCGATTATTCTCCATATGACGAAGGCGAGTGGAGACTGAAGCTGTGGCTCTTCATTGCATATGTTGTATCCTTTGTTTCTTTAGCTGGATCAGCTGGCCTACTGATCCAAGATTCACTTGATAAATCTGCCCCTTCAGTTTGGACTGGAGTTGCAGGTGTTTTGCAGTGTGTTTTTGTCTTGATCAGTGGACTGGTATATTGGACTTCTCATCCTGAATAA >Glyma06g11380.5 sequence type=CDS gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTTACTGGAGTTATGGGCAATTTTCGGCCCCGGCGTCGCCGGCGCTGTCTTCGGCGCCGGATGGTGGATCTGGCTTGACGCGGTCGTCTGCAGCTTGGTCACCGTTCCCTTCCTTCACTACCTTCCCGGAATTTTCGCATCTTTTGCGGCTTTGATGTTCAATTGCGTTAGAAAAGAAGACATCGATTATTCTCCATATGACGAAGGCGAGTGGAGACTGAAGCTGTGGCTCTTCATTGCATATGTTGTATCCTTTGTTTCTTTAGCTGGATCAGCTGGCCTACTGATCCAAGATTCACTTGATAAATCTGCCCCTTCAGTTTGGACTGGAGTTGCAGGTGTTTTGCAGTGTGTTTTTGTCTTGATCAGTGGACTGGTATATTGGACTTCTCATCCTGAATAA
>Glyma06g11380.2 sequence type=predicted peptide gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLLELWAIFGPGVAGAVFGAGWWIWLDAVVCSLVTVPFLHYLPGIFASFAALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAGSAGLLIQDSLDKSAPSVWTGVAGVLQCVFVLISGLVYWTSHPE* >Glyma06g11380.4 sequence type=predicted peptide gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLLELWAIFGPGVAGAVFGAGWWIWLDAVVCSLVTVPFLHYLPGIFASFAALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAGSAGLLIQDSLDKSAPSVWTGVAGVLQCVFVLISGLVYWTSHPE* >Glyma06g11380.5 sequence type=predicted peptide gene model=Glyma06g11380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLLELWAIFGPGVAGAVFGAGWWIWLDAVVCSLVTVPFLHYLPGIFASFAALMFNCVRKEDIDYSPYDEGEWRLKLWLFIAYVVSFVSLAGSAGLLIQDSLDKSAPSVWTGVAGVLQCVFVLISGLVYWTSHPE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
