Glyma06g11370 - SoyBase

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Report for Sequence Feature Glyma06g11370

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8719520
stop:	8730703
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77800	AT	Annotation by Michelle Graham. TAIR10: PHD finger family protein \| chr1:29253800-29260190 FORWARD LENGTH=1374	SoyBase	E_val: 0	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0954	KOG	PHD finger protein	JGI		ISS
PTHR13793	Panther	PHD FINGER PROTEINS	JGI		ISS
PTHR13793:SF6	Panther	AF10/AF17 SUBFAMILY	JGI		ISS
PF00628	PFAM	PHD-finger	JGI		ISS
UniRef100_G7J3P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein Jade-1 n=1 Tax=Medicago truncatula RepID=G7J3P3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A901	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A901 related cluster n=1 Tax=unknown RepID=UPI000233A901	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11370

Paralog	Evidence	Comments
Glyma04g43310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g108500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g11370

Limit To All Plant Sequences

>Glyma06g11370.1   sequence type=CDS   gene model=Glyma06g11370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCTGCTTCTTGTGTACTTTGTTGTTGCCGGTGATGACCGGGGGCCGATGTCACCCGTGGGAGGGTATGGCGGAGGGAGGTGATGCCGCCGCCGTGGAGAGACGGTGCGAGGTTAATTTTCCGGCGGAAATCCCTCGCGACTCTGCTGTTTGCAAAATTGACTACTTGTCCCAGGCTAGGAAATCGCTTGCGGAGCGTTCTCCTTTCGATGTAGCTGAAGAAACGTCGACTTCCGCGGCTGCGGTTACTCTGCCCAGTGGCTTGGCTGTTTTGCTGAACCGGCAGGGTGATAACAGGAGGCGTCCCAAGAAGTCTCATTCTGGCGCAAATAAGAGGAAATCGTCGAATAGGGCGAACCAGAAGAAGCCGGATGACTCTAACATTTGGATTGAGACGGAGCAGTACTTTAGGGACTTGACCGTGGCTGATATTGACACCTTGTTTGAGGCCTCTCGCATTTCTAGTTTAATGTCTCAGAACTGTTTCACCATCCCGTGTCTGGGAAATGCTCCTAGGTACAATGCAGTTACTAGTAATAGGGGGAATGGAATGGAGCCTGTTCCAAGATTCAATGAAGTAGTTTGTAGTGAGGATGGAAAAAAGGGTGAGGATGAAAACAAGGGTGGTGAAGTGGTGGAAAATGAGGATGAATTGTTGGTAATTGAGGCAATTGATGATGTTACTGTTGAACAAGTTCCTCCTCAGGATGACAAGAGTGAGGACATTTCTGATTCTTCAGTTAGTTTAGAGTGGTTTTTAGGTTGTAGGAATAAGGTTTCTTTGACTTCTGAGCGCCCTACCAAGAAAAGGAGGCTTTTGGGTGTTGAAGCTGGTTTGGAGAAAGTTTCAATGACTTGTCCTTGTGATGAGGGCCAACTGTTTTGCCATTATTGTGGTAGGGGAGACACCAGCAGAGATTCCAATAGGTTAATTGTCTGTGCTTCTTGTAAAGTGGTAGTTCACCGAAAGTGCTATGGTGTGTATGATGATGATGTAGATGGGACTTGGATGTGTTCCTGGTGCAAGCAAAAGGTTGATGTTGATGAATCGTCGAATCCTTGTGTTCTTTGCCCAAAGAAGGGTGGCGCATTAAAGCCAGTTAATAGCAGCGCAGAAGGTGCGGGGTTGGTCCCATTTGTGCACTTGTTTTGCTCTCTGTGGATGCCTGAGGTTTATATAGATGATCTGAAGAAGATGGAACCTGTTATGAATGTGGGAGAAATCAAGGAAACCCGAAAGAAACTAATGTGTAGTGTTTGCAAAGCAAAGTGTGGTGCATGTGTTCGATGTAGCCATGGAAGCTGCAGAGCTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGGATGGAGGTTTGGGCAAAGTATGGTAACAATAATGTTGAGTTGCGGGCTTTTTGCTTGAAGCACTCAGATCTACCAGAAAATAGAAGCATCTTGCCATTGAAAGGCTCTATCGCAGGTACGAATGATATTTCAGAAGCCAATGGCTTTCCAGTGGCATTGCCAGTGAGTGGTGAACAGAGCTTGAAAGATTGCAGGAATGGAGGATTAGCCTCTGATAGTAGTCCTGACAAACTGAACCATAATGATGAACTGCCAGATGGAGGACTATCTGATTGCAGGTTAAGTGCTCATGACGACATGTTGGGATGTGGTGCTGTGCCCCAACAAGATGTTGGAGTGGTAGGGAGAGCCAATGAGAATGTTGATGCATCTGACTCTCTCAGTTTTGCACTTGTTTTGAAGAAGTTGATTGATCGAGGAAAAGTTGATGTAAAAGACGTGGCATTGGAAATTGGCATTTCACCAGATACATTAACTGCAAATACCAATGAAGCTTATATGGCCCCTGATGTCCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTATATACTAATGCATTTCAGAAGGGTTTAAAAGTTAAATTCAAACCAGCCAATGCATCCAAAAACGACAGTGAAGCCATAGATGGTTCTGACACTTTACCAATATCAGATTCGGGTTTGTTGGATCCTGTTGCTGTTAAGTCAGTTCCGCCCAGGAGAAGAACCACCAGTAACATTAGGATTTTGAAGGATAACAAAGTGATATGTTCATCTGAGGGGGTTATTGGTGAGAATGGGATGCCGGTGGACATGTGCAGAGTAGGTCAGTCTGACTGTGACAATCCAACCAATTATAATGAAGCATCCATTCCCAATGCAACTGAAATGAACTTAACCAAGTCTGAGGATATTTTTCATGAAGTTCAAGGCAATGCTTCTGGATGTGTTTCAGCAGGCAACTCTACTGCTTGTTTGCTAAATGCTTCTGTGCTTTCTGATCACTGTCTTGTTCATTCTGCTTCAGAACCACTTGATTTTGGTTTCATAAAGAAGGATGCAATCTCTAGTTACATTCATCCATACATCAACAAGAAATTGCTGCAGATTCGTGATGGGGTGCCCTTGGAGGACATTATATGTTCAAGTGATGAGGGAAATTCTTCTTTGGTTGAATCCTTTCGGGCTAGTGCCTGCTCAAGTAGCCAAAATCAGAATTTAACTTGCATTGATATTTCAAAGCCTGATGAAGTAAATATGGAGCAGTTGGTTAGGGCTAGAAAAATGGGACTTTTGGAATTTTCTCCACAAGATGAATTGGAGGGGGAACTTGTTTATTTTCAGCATAGATTATTGCAGAATGCAGTTGCAAAAAAGAGGCATATTGATAACTTAATCTACAGTGTTGCCAAGAGTTTGCCACACGAGATTGATAAGGCACATCAACAAAGATGGGATGATGTTATTGTTAATCAATATCTGCGTGATCTTAGAGAGGCAAAAAAGCAAGGCAGAAAAGAAAGAAAGCACAAAGAAGCACAGGCAGTGTTGGCTGCTGCAACTGCTGCTGCGGCAGCATCTACTAGGGCTCTCCGGAAAGACACCTTAGATGAATCAATGCAACAAGAGAATTTGTTAAAATTGGATACTCTAAATGGAAGAACCGGTGCTTGTTCTCAGCCGATGTCTCGAGCCAAAGAGACACTTTCAAGAGTAGCTGTGACAAGAACTTCGTCAGAGAAATATTCGGATTTTTGCATGCCAACCTCCGATTTGTCTAAGGAGCATTGTAAATCATGCGATATTTGCAGACGATCAGAGTTTATTTTAAACCCTATCCTAGTCTGCTCTGGTTGCAAGGTTTCGGTGCACTTGGATTGCTACCGTAGTGTGAAAGAAACAACAGGTCCATGGTACTGTGAGTTATGTGAAGATTTGTCATCTAGAAGCTCCGGGGCATCTGCTATCAATTTCTGGGAGAAGCCTGTTGCAGAATGTGCTCTCTGTGGTGGTACTACTGGTGCTTTTAGGAAGTCTTCTAATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGGTTTTTGAGTCTACATTCAAAAGAGGACAAATAAATGCTGTTGAAGGAATGGAAACTTTGCCAAAAGGAGTTGACATTTGTTGCATCTGCCACCACAAGCATGGTGTATGCATGAAGTGTTGCTATGGCCATTGTCAGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTACATGAATGTGAGGACTACTGGTGGCAAGGCTCAACACAAAGCTTACTGTGAAAAACATAGTTTGGAGCAGAAGGCAAAGGCTGAAACTCAAAAACATGGAATTGAAGAGTTAAAAAGTATCAGGCAAATTAGGGTTGAACTAGAGAGATTACGTCTCCTTTGTGAAAGAATTGTGAAACGTGAAAAAATAAAGAGGGAATTGGTACTATGTTCACATGACATACTGGCCTTTAAAAGAGATCATGTTGCTAGGTCCGTGCTGGTTCGAAGCCCTTTCATCCTTCCGGATGGTAGTTCAGAATCAGCTACAACGTCCCTTAAAGGGAACACAGAGGGATACAGATCATGCAGTGAACCACTTCAAAGATCAGATGATGTTACTGTGGACAGTTCAGTTTCTGCTAAGCGCCGTGTCAGAGTCGCCATATCTATGGACACAGACTCAAAATTGGACGATGACTGCTCAACCTCTCAAAGTCGATACAACCACAGGATTCCAGATAGATTGCAATTTTCTGGCAAGAAGGTTCCTCATAGAACTGCTGCATCACGTAATATTTCAGATGAAGGTGGATGGATATCCAAATCTAGAAATCATTCCGATAGATTCGGAAAAGAGCTTGTTATGACGTCAGATGAAGCATCTATGAAGAATTCAATGCTACCTAAAGGATATGCATATGTTCCTGCTGATTGCTTGTCAAATGAGAAGCACTCTGACGAGGACGTATATGCTAGTGAACCAGTGGAGCATGACAGGTAG

Predicted protein sequences of Glyma06g11370

Limit To All Plant Sequences

>Glyma06g11370.1   sequence type=predicted peptide   gene model=Glyma06g11370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCFLCTLLLPVMTGGRCHPWEGMAEGGDAAAVERRCEVNFPAEIPRDSAVCKIDYLSQARKSLAERSPFDVAEETSTSAAAVTLPSGLAVLLNRQGDNRRRPKKSHSGANKRKSSNRANQKKPDDSNIWIETEQYFRDLTVADIDTLFEASRISSLMSQNCFTIPCLGNAPRYNAVTSNRGNGMEPVPRFNEVVCSEDGKKGEDENKGGEVVENEDELLVIEAIDDVTVEQVPPQDDKSEDISDSSVSLEWFLGCRNKVSLTSERPTKKRRLLGVEAGLEKVSMTCPCDEGQLFCHYCGRGDTSRDSNRLIVCASCKVVVHRKCYGVYDDDVDGTWMCSWCKQKVDVDESSNPCVLCPKKGGALKPVNSSAEGAGLVPFVHLFCSLWMPEVYIDDLKKMEPVMNVGEIKETRKKLMCSVCKAKCGACVRCSHGSCRASFHPLCAREARHRMEVWAKYGNNNVELRAFCLKHSDLPENRSILPLKGSIAGTNDISEANGFPVALPVSGEQSLKDCRNGGLASDSSPDKLNHNDELPDGGLSDCRLSAHDDMLGCGAVPQQDVGVVGRANENVDASDSLSFALVLKKLIDRGKVDVKDVALEIGISPDTLTANTNEAYMAPDVQHKIVNWLKAHVYTNAFQKGLKVKFKPANASKNDSEAIDGSDTLPISDSGLLDPVAVKSVPPRRRTTSNIRILKDNKVICSSEGVIGENGMPVDMCRVGQSDCDNPTNYNEASIPNATEMNLTKSEDIFHEVQGNASGCVSAGNSTACLLNASVLSDHCLVHSASEPLDFGFIKKDAISSYIHPYINKKLLQIRDGVPLEDIICSSDEGNSSLVESFRASACSSSQNQNLTCIDISKPDEVNMEQLVRARKMGLLEFSPQDELEGELVYFQHRLLQNAVAKKRHIDNLIYSVAKSLPHEIDKAHQQRWDDVIVNQYLRDLREAKKQGRKERKHKEAQAVLAAATAAAAASTRALRKDTLDESMQQENLLKLDTLNGRTGACSQPMSRAKETLSRVAVTRTSSEKYSDFCMPTSDLSKEHCKSCDICRRSEFILNPILVCSGCKVSVHLDCYRSVKETTGPWYCELCEDLSSRSSGASAINFWEKPVAECALCGGTTGAFRKSSNGQWVHAFCAEWVFESTFKRGQINAVEGMETLPKGVDICCICHHKHGVCMKCCYGHCQTTFHPSCARSAGLYMNVRTTGGKAQHKAYCEKHSLEQKAKAETQKHGIEELKSIRQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHVARSVLVRSPFILPDGSSESATTSLKGNTEGYRSCSEPLQRSDDVTVDSSVSAKRRVRVAISMDTDSKLDDDCSTSQSRYNHRIPDRLQFSGKKVPHRTAASRNISDEGGWISKSRNHSDRFGKELVMTSDEASMKNSMLPKGYAYVPADCLSNEKHSDEDVYASEPVEHDR*

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