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Report for Sequence Feature Glyma06g11351

Feature Type:gene_model
Chromosome:Gm06
Start:8693960
stop:8695753
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g11351
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G33406AT Annotation by Michelle Graham. TAIR10: hAT dimerisation domain-containing protein / transposase-related | chr5:12676126-12678403 REVERSE LENGTH=509 SoyBaseE_val: 9.00E-86ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR10775Panther AC-LIKE TRANSPOSASE-RELATED JGI ISS
PTHR10775:SF75Panther HAT DIMERISATION DOMAIN-CONTAINING PROTEIN JGI ISS
PF05699PFAM hAT family dimerisation domain JGI ISS
UniRef100_F4KHA1UniRef Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerization domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KHA1_ARATH SoyBaseE_val: 4.00E-83ISS
UniRef100_UPI000233CA4AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233CA4A related cluster n=1 Tax=unknown RepID=UPI000233CA4A SoyBaseE_val: 3.00E-174ISS

Expression Patterns of Glyma06g11351
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g11351 not represented in the dataset
Glyma06g11351 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g11351 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g108300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g11351
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g11351
>Glyma06g11351.1   sequence type=CDS   gene model=Glyma06g11351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATCATTTTGGAATGATGTTGTCTACACTTTAAAGGCTATGGGGCCTCTTGTAAGTGTGTTGAGGTTGGTGGATAATGAAAAAAAACCTGCAATGGGCTTCATTTATGAAGCAATGGATAGGGCCAACGAGGCAATTCAAAGAGCTTTCAATAACAATGAAGGGAAGTATAAGGATATCCTTGCAATCATTGATAAAAGATGGGATTGCCAACTTCACCACCCTTTGCATGCAACGGGTTATTATCTAAATCCGAAGTTCTTTTACACCAATCCAAACATTCACAATGATAATGAAGTGGTGGATGGCCTCTACAAATGTATTGATAGGCTTAGTGAAGATGATAATTTTGTAGTTGAAGTTCACAAACAATTGCTAGTGTATAAAAGGGCTGGAGAGAGGTTTGGTATGACTGTAGCAATGAAAGCAAGGACTGAAATATCTCCTACTGAGTGGTGGAAATTGTATGGAGGGAAAACACAACACTTGCAAACCATTGCCATTAAAGTTCTAAGTTTGACTTGTAGCTCATCGGGATGTGAGCGTAATTGGAGTACCTTTGAGCATATTCACTTAAAGAAGAGACGTAGGCTTGAGCACCAAAAGCTTCAAGACTTGGTTTATGTTAAGTATAACCAAGCTCTTCTAGATCGCTTTGAGTGTCATGATGTGATTGATCCTATTGCTTTAAATGATATTGATGATAGCAATGAGTGGTTATTGGGAGAATTGGAAGGAGAAGAAATTGGTAATGATTAG
Predicted protein sequences of Glyma06g11351
>Glyma06g11351.1   sequence type=predicted peptide   gene model=Glyma06g11351   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSFWNDVVYTLKAMGPLVSVLRLVDNEKKPAMGFIYEAMDRANEAIQRAFNNNEGKYKDILAIIDKRWDCQLHHPLHATGYYLNPKFFYTNPNIHNDNEVVDGLYKCIDRLSEDDNFVVEVHKQLLVYKRAGERFGMTVAMKARTEISPTEWWKLYGGKTQHLQTIAIKVLSLTCSSSGCERNWSTFEHIHLKKRRRLEHQKLQDLVYVKYNQALLDRFECHDVIDPIALNDIDDSNEWLLGELEGEEIGND*






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