SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36390 | AT | Annotation by Michelle Graham. TAIR10: Co-chaperone GrpE family protein | chr1:13701811-13703524 REVERSE LENGTH=279 | SoyBase | E_val: 1.00E-70 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000774 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenyl-nucleotide exchange factor activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0042803 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity | SoyBase | N/A | ISS |
| GO:0051087 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: chaperone binding | SoyBase | N/A | ISS |
| PTHR21237 | Panther | GRPE PROTEIN | JGI | ISS | |
| PTHR21237:SF4 | Panther | GRPE PROTEIN (HEAT SHOCK PROTEIN) (CGE1) | JGI | ISS | |
| PF01025 | PFAM | GrpE | JGI | ISS | |
| UniRef100_I1KA34 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GrpE protein homolog n=2 Tax=Glycine max RepID=I1KA34_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KA34 | UniRef | Annotation by Michelle Graham. Best UniRef hit: GrpE protein homolog n=2 Tax=Glycine max RepID=I1KA34_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g11310 not represented in the dataset |
Glyma06g11310 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g108000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11310.1 sequence type=CDS gene model=Glyma06g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTTTTCTTTCCAACCAATCTCTGTTGGGTTCTTGTCCTTGTTCTACTCCCTTCTCTTCAAAGCCCTTTCAAACCCTAAAACCCCAAATCTTATCTTTTCCATCTCGCGGGTTTCCGCGCCCCCTAATTTCCTCAGTCAATCGAAGAACCCAATTGAAGTCTTCCCAAGATTTCCCTCCAACTACAAATGATGAAACAGAGGAGACCCAGAATGATGTAAGAGGGACAAATGATGATGAAGATAAAAAACAAGTACCTAGTTTAATGATCCTCCTTGAAGCATACAAGGAAGCCTTTTTTAATGGCGACCAAAATACCGTAGCTCAGATTGAAGAGGGGATATATTCAATAGCAAATAGGAAAAATAAATTGATTCAGAAATTATCAAGTTTATCGGCAGACAAAGCTGCTTCCAAGAAGAGTTATCTTCGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGGACTGACAAAGAGAGACTTAACATCCAATCCGATGCCCAGCAACAAGTCATTGAAAAGCTTTTGTTGATGGTCGACAATTTTGAGAGAACCCAACAGCAAATTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGGTGTTAGCTATCAAGGTATTTACAAACAATTTGTAGAGGTTCTGAGGAATCATAATGTTTCAGTGGTAGCAACAGTGGGCAAGCCGTTTAATCCCTTGCAACATGAAGCCGTTGCACGTGAGGAGTCCACAGAGTTCAAAAAAGGGATTATAATTAAAGAATCCCGACGTGGTTTCTTGCTCAGAGATCGAGTTCTAAGGCCAGCCCTTGTCAAGGTTTCCTTAGGTCCTGGAAATAAGAAATCTCCCGTGTCTCCTGACAAGTCTGTGGAGCAACCTTCAACAGCTGCTGGAATAGATGAAAGATAG
>Glyma06g11310.1 sequence type=predicted peptide gene model=Glyma06g11310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATFLSNQSLLGSCPCSTPFSSKPFQTLKPQILSFPSRGFPRPLISSVNRRTQLKSSQDFPPTTNDETEETQNDVRGTNDDEDKKQVPSLMILLEAYKEAFFNGDQNTVAQIEEGIYSIANRKNKLIQKLSSLSADKAASKKSYLRLQADFDNFRKRTDKERLNIQSDAQQQVIEKLLLMVDNFERTQQQIKAATEKEKKIGVSYQGIYKQFVEVLRNHNVSVVATVGKPFNPLQHEAVAREESTEFKKGIIIKESRRGFLLRDRVLRPALVKVSLGPGNKKSPVSPDKSVEQPSTAAGIDER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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