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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12350 | AT | Annotation by Michelle Graham. TAIR10: 4-phospho-panto-thenoylcysteine synthetase | chr1:4198870-4200633 FORWARD LENGTH=317 | SoyBase | E_val: 2.00E-137 | ISS |
| GO:0015937 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coenzyme A biosynthetic process | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004632 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphopantothenate--cysteine ligase activity | SoyBase | N/A | ISS |
| KOG2728 | KOG | Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase | JGI | ISS | |
| PTHR12290 | Panther | CORNICHON | JGI | ISS | |
| PTHR12290:SF2 | Panther | CORNICHON-RELATED | JGI | ISS | |
| PF04127 | PFAM | DNA / pantothenate metabolism flavoprotein | JGI | ISS | |
| UniRef100_G7JS13 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphopantothenate-cysteine ligase n=1 Tax=Medicago truncatula RepID=G7JS13_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KA30 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA30_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g11270 not represented in the dataset |
Glyma06g11270 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g43390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g107500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11270.3 sequence type=transcript gene model=Glyma06g11270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATTAAACCGCTGGGTACTAACGGTGTAAGCAACCTAGCTAGATGATTTATTAGCCCACAAATCAATCTATATTTATTTTTTTTGAAACAAATCAATCTATAAATTGATCACCTCAAAATCAAATTATTAAACCATACTCATCCAACTAATTTTATTCGCTTATAATAGCTTTGATCCTTTTTGTGATTAATTCGCCGAATATTGTTATTTGTTATTAATGTTTACGCAAATGCCTCAATTATAAGATGCACCACGTTCTGTGAACTTTTCACCTTCACTCTGTATCACTAATCCTTCTCTGCTTGGAGGCTTTTTTTTTTTTTTTTGATGGATCCGGCAAAGGGATTGGAAGCTTCGGGGGAGAAGACCCTTCAAGCAGAAGTGAAAGCTTTTTTCGATTCTGCTCCTCCTTTGCAGAAAAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCATTTCTTCTCCATCAGCGAATGGGAAAGTTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGTGTTCGCTATGTGGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACTGAGTATTTCCTGAAGGCTGGATATGGTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCACCGATGAGGCGAACATTCAAGTTTGCGAGGCTTATTCTGAAGCAGTGAAGAGGGCTATCGTGGATCATCATACTGCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAGTATCTCCAGATGTTACAAATAATTGCAATGTCAATGAGGTGTATTGGTCCACATGCAATGTTCTATCTTGCTGCGGCAGTGTCTGACTATTATGTTCCTTGGAAGGACATGGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAATGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCACATCTTTCAAGCTAGAGACAGATTCAAACATTCTTCTAAATAAGGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTTGCAAGTCGAAAGGAGCAAGTAGTGGTTGTCACTAGTGCCGAGAAGGTTACCGTTCAGCGTGATAATAGTCAGTCTGATAATGATGTTGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGAGTCTAGGGAATGACTTTGGCTTCTCCTCGTTACAGTTACAGTTCTAGACACTACAACTCATTGGATCAATAAGTCATGATCATGAATAAAAAGGAGATGAATTAGACAGTATGGATACGGGGTCTAAAGAAGAAAAGAAATGTAGCGGAGACGACAGTTCTAACCATACATTTGACAGACTTCGGTTATATATAAACTTTATTTTCTTTTATGGGATATGCATGAACTTTGTATTTTACTTCTTGTTATTCTTATTGTTAATTGGGCTACCCTTTTCGTCATATTAATTGATAATATTGAAGTTAAGATGTGTGTCGTGAAACTTTGGTACAGTTTTTTGGTTTTGCTGGAATTGGTAGTTTAAGCGGAT
>Glyma06g11270.2 sequence type=CDS gene model=Glyma06g11270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCGGCAAAGGGATTGGAAGCTTCGGGGGAGAAGACCCTTCAAGCAGAAGTGAAAGCTTTTTTCGATTCTGCTCCTCCTTTGCAGAAAAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCATTTCTTCTCCATCAGCGAATGGGAAAGTTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGTGTTCGCTATGTGGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACTGAGTATTTCCTGAAGGCTGGATATGGTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCACCGATGAGGCGAACATTCAAGTTTGCGAGGCTTATTCTGAAGCAGTGAAGAGGGCTATCGTGGATCATCATACTGCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAGTATCTCCAGATGTTACAAATAATTGCAATGTCAATGAGGTGTATTGGTCCACATGCAATGTTCTATCTTGCTGCGGCAGTGTCTGACTATTATGTTCCTTGGAAGGACATGGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAATGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCACATCTTTCAAGCTAGAGACAGATTCAAACATTCTTCTAAATAAGGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTTGCAAGTCGAAAGGAGCAAGTAGTGGTTGTCACTAGTGCCGAGAAGGTTACCGTTCAGCGTGATAATAGTCAGTCTGATAATGATGTTGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGA >Glyma06g11270.3 sequence type=CDS gene model=Glyma06g11270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCGGCAAAGGGATTGGAAGCTTCGGGGGAGAAGACCCTTCAAGCAGAAGTGAAAGCTTTTTTCGATTCTGCTCCTCCTTTGCAGAAAAGTGATGAGATAACTCAGAAGTTGAATCAGTTCATTCAACGCATTTCTTCTCCATCAGCGAATGGGAAAGTTAGGAGAATTGTTTGTGTGACTTCTGGTGGCACCACCGCGCCATTGGAACAACGATGTGTTCGCTATGTGGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACTGAGTATTTCCTGAAGGCTGGATATGGTGTTATCTTTCTGTACCGGAAGAGAAGTTTCCAGCCATTTTGTAGATCCCTTCCTGATGATCCCTTACTTGAATGCTTCAAGCCCACCGATGAGGCGAACATTCAAGTTTGCGAGGCTTATTCTGAAGCAGTGAAGAGGGCTATCGTGGATCATCATACTGCAGTGGCAGGCGGTCTCTTATTGAAACTTCCTTTCAACACCATATTTGAGTATCTCCAGATGTTACAAATAATTGCAATGTCAATGAGGTGTATTGGTCCACATGCAATGTTCTATCTTGCTGCGGCAGTGTCTGACTATTATGTTCCTTGGAAGGACATGGTAGAGCACAAAATTCAGTCAGGATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAATGCTTAGGAAAGATTGGGCTCCTCTGGCTTTCTGCACATCTTTCAAGCTAGAGACAGATTCAAACATTCTTCTAAATAAGGCTGGTGCAGCTCTTGAAAAGTACAAGATGCATGCAGTTGTTGCAAATGAACTTGCAAGTCGAAAGGAGCAAGTAGTGGTTGTCACTAGTGCCGAGAAGGTTACCGTTCAGCGTGATAATAGTCAGTCTGATAATGATGTTGAGAATCCCCTGATTAAACTTCTTTCGGAGAAACATGCCACTTACATTGAGGATTCTGGTAGATGA
>Glyma06g11270.2 sequence type=predicted peptide gene model=Glyma06g11270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPAKGLEASGEKTLQAEVKAFFDSAPPLQKSDEITQKLNQFIQRISSPSANGKVRRIVCVTSGGTTAPLEQRCVRYVDNFSSGHRGATSTEYFLKAGYGVIFLYRKRSFQPFCRSLPDDPLLECFKPTDEANIQVCEAYSEAVKRAIVDHHTAVAGGLLLKLPFNTIFEYLQMLQIIAMSMRCIGPHAMFYLAAAVSDYYVPWKDMVEHKIQSGSHLLDVKLVQVPKMLSMLRKDWAPLAFCTSFKLETDSNILLNKAGAALEKYKMHAVVANELASRKEQVVVVTSAEKVTVQRDNSQSDNDVENPLIKLLSEKHATYIEDSGR* >Glyma06g11270.3 sequence type=predicted peptide gene model=Glyma06g11270 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPAKGLEASGEKTLQAEVKAFFDSAPPLQKSDEITQKLNQFIQRISSPSANGKVRRIVCVTSGGTTAPLEQRCVRYVDNFSSGHRGATSTEYFLKAGYGVIFLYRKRSFQPFCRSLPDDPLLECFKPTDEANIQVCEAYSEAVKRAIVDHHTAVAGGLLLKLPFNTIFEYLQMLQIIAMSMRCIGPHAMFYLAAAVSDYYVPWKDMVEHKIQSGSHLLDVKLVQVPKMLSMLRKDWAPLAFCTSFKLETDSNILLNKAGAALEKYKMHAVVANELASRKEQVVVVTSAEKVTVQRDNSQSDNDVENPLIKLLSEKHATYIEDSGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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