Glyma06g11260 - SoyBase

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Report for Sequence Feature Glyma06g11260

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8629814
stop:	8633059
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G77930	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr1:29301184-29302467 FORWARD LENGTH=271	SoyBase	E_val: 1.00E-128	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0715	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_B9RJD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein DNAj, putative n=1 Tax=Ricinus communis RepID=B9RJD2_RICCO	SoyBase	E_val: 1.00E-119	ISS
UniRef100_I1KA29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA29_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g11260 not represented in the dataset	Glyma06g11260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11260

Paralog	Evidence	Comments
Glyma04g43400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g107400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g11260

Limit To All Plant Sequences

>Glyma06g11260.2   sequence type=transcript   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACACCAATCAGTGTCATGACACAGGAAAAGAAGGCAGACCGTCCACATATTTCGCGGGAAAAAAAGATTCCCGGCTCTTATTCATCAAAAAATGATAGAATTTCCTCTTTGAGCAATAAAATTCAGAAAAAAAATTACATAAGCTTAAAGATTCTGTCAGATTCATGGTGCTAGTTATCGTTGAGGGCCCCAGAACCTCTTCTCTCCGTTCACGCCTTCCACAACAACCAACAAGGAAGGGTTTCGTTCTTGTAACTCGAATTGGCGTCGAGTGAAGTGAAGGGCTTCAAAAACCAGAGGGAAACTATGAGCAATCTCAGAACCCTATGTAGACCTCAGACGGTGTTCTCTTTCATTAGTTTCCAACACCAATTTCGTTCTAGGGTTTCCTTTCGAAACCCTAATTGCAAGCCCCGTTTGCCATCGCCGTTTCTGTATTCTACAATCGCTTCCCGGGGTTCCAATCCCTGGTTTCGCGTGAACCAGAGGAGAACCGTGGCCAAGGCAACAAACTGGGCGGAACAAAAATCCCCATATGAAACTCTCGAATTGGAAGGAGATGCCGATGATGAGCAGATAAAGAATGCTTACAGACGCTTGGCCAAATTCTATCATCCAGATGTCTGCTGGAACGTGGGAGATGTTTTGTTTTTCTTTACAAGAATGTTCCTATGAAGCAGTTATGGCTATCTATGATGGCAGAGGAACCCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAAATTCAATCTGCTTATGAATTGCTTATAGATAGGGAGAGGCGAAGACAGTATGATATGGATAGCCGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCGACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAGGATTCTGGCAAGAGAAAAGAAGGCTTCAGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGTCTGAGGAAGAAAAGAAGAAGACTATCAACCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCGGATAGTGATGACGCACTGTAGTCAACATGGGGCTCTGTTTCCACATACCAATACCTAATATTTGATCAATACCTTGATGCTTCCTCGGCGAATCTAATTATTTTTTTTATTATTTACAAAAGATATATGTACATATATTTTGTTATTTCCAGTCTCAAATGATATTTTAGATTTTCAGTTATAGCTCAATACAATGATGATCTTAAATTTGGAGAAGCCTTAGATAAAGATCTAGTAACGTCCAAGTTAGATTTCTGCACGGCGATATACTTATGGGACAATTTATTGTTGAATATTGTGCAAGTTAAAAGGTTAAGGATTGTTTTGGGTGGGTGGGAGAAAATGAAACGGCGAA

>Glyma06g11260.3   sequence type=transcript   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACACCAATCAGTGTCATGACACAGGAAAAGAAGGCAGACCGTCCACATATTTCGCGGGAAAAAAAGATTCCCGGCTCTTATTCATCAAAAAATGATAGAATTTCCTCTTTGAGCAATAAAATTCAGAAAAAAAATTACATAAGCTTAAAGATTCTGTCAGATTCATGGTGCTAGTTATCGTTGAGGGCCCCAGAACCTCTTCTCTCCGTTCACGCCTTCCACAACAACCAACAAGGAAGGGTTTCGTTCTTGTAACTCGAATTGGCGTCGAGTGAAGTGAAGGGCTTCAAAAACCAGAGGGAAACTATGAGCAATCTCAGAACCCTATGTAGACCTCAGACGGTGTTCTCTTTCATTAGTTTCCAACACCAATTTCGTTCTAGGGTTTCCTTTCGAAACCCTAATTGCAAGCCCCGTTTGCCATCGCCGTTTCTGTATTCTACAATCGCTTCCCGGGGTTCCAATCCCTGGTTTCGCGTGAACCAGAGGAGAACCGTGGCCAAGGCAACAAACTGGGCGGAACAAAAATCCCCATATGAAACTCTCGAATTGGAAGGAGATGCCGATGATGAGCAGATAAAGAATGCTTACAGACGCTTGGCCAAATTCTATCATCCAGATGTCTGCTGGAACGTGGGAGATGTTTTGTTTTTCTTTACAAGAATGTTCCTATGAAGCAGTTATGGCTAGTGAGTGTTTCTTCAACTGTGTGCCATACAACTTAGTTGTGATACAGCTCTCCTGTGGTGGCATTGTTTATTAAAGATGAATATAACCTCTCAAGACATATTAACTCTGTTTACTCTTCAAGTCTATGATGGCAGAGGAACCCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAAATTCAATCTGCTTATGAATTGCTTATAGATAGGGAGAGGCGAAGACAGTATGATATGGATAGCCGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCGACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAGGATTCTGGCAAGAGAAAAGAAGGCTTCAGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGTCTGAGGAAGAAAAGAAGAAGACTATCAACCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCGGATAGTGATGACGCACTGTAGTCAACATGGGGCTCTGTTTCCACATACCAATACCTAATATTTGATCAATACCTTGATGCTTCCTCGGCGAATCTAATTATTTTTTTTATTATTTACAAAAGATATATGTACATATATTTTGTTATTTCCAGTCTCAAATGATATTTTAGATTTTCAGTTATAGCTCAATACAATGATGATCTTAAATTTGGAGAAGCCTTAGATAAAGATCTAGTAACGTCCAAGTTAGATTTCTGCACGGCGATATACTTATGGGACAATTTATTGTTGAATATTGTGCAAGTTAAAAGGTTAAGGATTGTTTTGGGTGGGTGGGAGAAAATGAAACGGCGAA

Coding sequences of Glyma06g11260

Limit To All Plant Sequences

>Glyma06g11260.1   sequence type=CDS   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAATCTCAGAACCCTATGTAGACCTCAGACGGTGTTCTCTTTCATTAGTTTCCAACACCAATTTCGTTCTAGGGTTTCCTTTCGAAACCCTAATTGCAAGCCCCGTTTGCCATCGCCGTTTCTGTATTCTACAATCGCTTCCCGGGGTTCCAATCCCTGGTTTCGCGTGAACCAGAGGAGAACCGTGGCCAAGGCAACAAACTGGGCGGAACAAAAATCCCCATATGAAACTCTCGAATTGGAAGGAGATGCCGATGATGAGCAGATAAAGAATGCTTACAGACGCTTGGCCAAATTCTATCATCCAGATGTCTATGATGGCAGAGGAACCCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAAATTCAATCTGCTTATGAATTGCTTATAGATAGGGAGAGGCGAAGACAGTATGATATGGATAGCCGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCGACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAGGATTCTGGCAAGAGAAAAGAAGGCTTCAGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGTCTGAGGAAGAAAAGAAGAAGACTATCAACCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCGGATAGTGATGACGCACTGTAG

>Glyma06g11260.2   sequence type=CDS   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTACAGACGCTTGGCCAAATTCTATCATCCAGATGTCTGCTGGAACGTGGGAGATGTTTTGTTTTTCTTTACAAGAATGTTCCTATGAAGCAGTTATGGCTATCTATGATGGCAGAGGAACCCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAAATTCAATCTGCTTATGAATTGCTTATAGATAGGGAGAGGCGAAGACAGTATGATATGGATAGCCGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCGACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAGGATTCTGGCAAGAGAAAAGAAGGCTTCAGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGTCTGAGGAAGAAAAGAAGAAGACTATCAACCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCGGATAGTGATGACGCACTGTAG

>Glyma06g11260.3   sequence type=CDS   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATATAACCTCTCAAGACATATTAACTCTGTTTACTCTTCAAGTCTATGATGGCAGAGGAACCCTTGAAGAAGGTGAAACAGCAGAAGCTAGATTCATCAAAATTCAATCTGCTTATGAATTGCTTATAGATAGGGAGAGGCGAAGACAGTATGATATGGATAGCCGGGTCAACCCCATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCGACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAGGATTCTGGCAAGAGAAAAGAAGGCTTCAGCTGAATATTACTCGAATACCCTTAAAAGGCACACCCTTATACTGAAGAAAAGAGATTTGATGCGAAGAAAGTCTGAGGAAGAAAAGAAGAAGACTATCAACCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGATTCGGATAGTGATGACGCACTGTAG

Predicted protein sequences of Glyma06g11260

Limit To All Plant Sequences

>Glyma06g11260.1   sequence type=predicted peptide   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNLRTLCRPQTVFSFISFQHQFRSRVSFRNPNCKPRLPSPFLYSTIASRGSNPWFRVNQRRTVAKATNWAEQKSPYETLELEGDADDEQIKNAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQSAYELLIDRERRRQYDMDSRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRRLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLILKKRDLMRRKSEEEKKKTINRLLAAEGLELDDSDSDDAL*

>Glyma06g11260.2   sequence type=predicted peptide   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTDAWPNSIIQMSAGTWEMFCFSLQECSYEAVMAIYDGRGTLEEGETAEARFIKIQSAYELLIDRERRRQYDMDSRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRRLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLILKKRDLMRRKSEEEKKKTINRLLAAEGLELDDSDSDDAL*

>Glyma06g11260.3   sequence type=predicted peptide   gene model=Glyma06g11260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNITSQDILTLFTLQVYDGRGTLEEGETAEARFIKIQSAYELLIDRERRRQYDMDSRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELNLRVRRLSRSKIDPDEARRILAREKKASAEYYSNTLKRHTLILKKRDLMRRKSEEEKKKTINRLLAAEGLELDDSDSDDAL*

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