SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22070 | AT | Annotation by Michelle Graham. TAIR10: TGA1A-related gene 3 | chr1:7789651-7791821 FORWARD LENGTH=384 | SoyBase | E_val: 2.00E-125 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0016045 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of bacterium | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0045088 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response | SoyBase | N/A | ISS |
| GO:0050776 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of immune response | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005516 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin binding | SoyBase | N/A | ISS |
| PTHR22952 | Panther | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR22952:SF57 | Panther | TGA4 (TGACG MOTIF-BINDING FACTOR 4), DNA BINDING / | JGI | ISS | |
| PF00170 | PFAM | bZIP transcription factor | JGI | ISS | |
| UniRef100_G7K933 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor TGA3 n=1 Tax=Medicago truncatula RepID=G7K933_MEDTR | SoyBase | E_val: 2.00E-168 | ISS |
| UniRef100_UPI000233A8FE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A8FE related cluster n=1 Tax=unknown RepID=UPI000233A8FE | SoyBase | E_val: 0 | ISS |
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Glyma06g11250 not represented in the dataset |
Glyma06g11250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g43411 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g107300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g11250.2 sequence type=transcript gene model=Glyma06g11250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATTTGTTTGCATGCCGGAGAAGAATAATAATGATATTCTTCAGACAACTTAGCTAGTGAGTTTTCAGATGTATATATAACCTACTATATTCAACTCTTATGAGCATCAACAGGGACTCTCGTGGACTAACCAAATTCCAAGTTACAGATTCTATCAAAGCTAGCTACCTATTGAAAACTCTTCTTTTATCATTTGGGCGTTGCAAGAGATAAATGAAAATGGACATATACGAGCCATTTCAGCAAGTTAGCCTGTGGGGGGACAACTTTAAACTTGATGGCGGTCTGAATTCAATTGCTTCCCCAATGTTAATGGTTGACAGTACTAGTGTGGAGAACAAGTCTGAGGATATTCCTCAGGAATCAAGAGAGCCTTCTGGTTCTGGAGCCGATCAAGAGGCTACAAATAAAGAAGTTAACAAGATGCTAAGACGCCTAGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTACGGAAAAAGGCTTACGTTAAACAATTAGAATCAAGCCGTTCGAAGCTCATGCAACTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTATATGGGCACTGTATTAGATGCCGGCTATATAGGATCAACATCAGAAACAATAAATCCAGGGATTGTGGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACAAAGGCGGAACGAAGAACTTAGACATGCATTTCAAGCGCAAGCATCTGATGTACAGCTGAATGTAGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTTTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTCCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGCTCCCGTCCATCACAGCTTCTAAACATCATCGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGTTAGTATTAGCAACCTCCGTCTATCGTCTCAACAAGCTGAAGATGCTCTTTCACTAGGATTGGAAAAACTTCAGCAGAGTTTGGTCCACGACATGGCAGTTGATTCACTGGGTGTAGGAAACTTCGGACTTCAGATGGTTCTTGCGATGGAAAAATTTGAGGCACTAGAAGGTTTTGTAATCCAGATTAGAAATTGTTACCACAACTTTAAGTTCATCATTTTCACTCAAATTTCCACCCCTGAGCACCTCAGCAACACCAAGTTCATCATATCATGCTAGATTACTGTACTTGCAAAAATGCAATATTTGCTCATATGCAACAACATTGTTATCAAGTGAAATGCATTTTCTCTTGTCCACAGGCAGATCACCTTAGGCAACAAACTCTGCTTCACATGTCACGCATCCTTTCAACTCACCAAGCTGCTCGCGGCTTACTGGCTCTCGGGGAATACTTTCATCGTCTTCGCACTCTTTGCTCTCTTTGGTATGCTCGTCCATATGACCTTGCCTAGCCTCTCTAACTTAGGCTCCTCAGGACTCCACAAATCACCTAAGATTGCTCCTTAGAGGAAGAAACCTACCTGCTTCTGCTTGAACTTCTTCAACTGAATGATCTGTTCCGTGCTTTACAAAACAGTTACTCGATTTTGGATATGAATATGAGTTAATGCCGTGTACTAGCATCAGCATGAAGCAAAATTATGTGATTTGCTGCTCTTGAGAGTGTGCTTGTACATAATCAGTGTATCATCTTTAGTAATTAGTACTATATTATATATTATGAAAAACTTTCTAGAATCTTTCGGGGAAAAAAAGTGTCCATTATTTTACTTTACTTTGAATCGGTTACTTGAGTTTATTGTCATTGAAAAGAGAGGAAACAAAGTCATAATTTAAAAATAAGTTTATCTATGCTCAAAAAAGGAGAGACATGTAGTGGAAATTTCATGTTATAAGTTATTGGTTGA
>Glyma06g11250.1 sequence type=CDS gene model=Glyma06g11250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTAGCCTGTGGGGGGACAACTTTAAACTTGATGGCGGTCTGAATTCAATTGCTTCCCCAATGTTAATGGTTGACAGTACTAGTGTGGAGAACAAGTCTGAGGATATTCCTCAGGAATCAAGAGAGCCTTCTGGTTCTGGAGCCGATCAAGAGGCTACAAATAAAGAAGTTAACAAGATGCTAAGACGCCTAGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTACGGAAAAAGGCTTACGTTAAACAATTAGAATCAAGCCGTTCGAAGCTCATGCAACTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTATATGGGCACTGTATTAGATGCCGGCTATATAGGATCAACATCAGAAACAATAAATCCAGGGATTGTGGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACAAAGGCGGAACGAAGAACTTAGACATGCATTTCAAGCGCAAGCATCTGATGTACAGCTGAATGTAGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTTTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTCCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGCTCCCGTCCATCACAGCTTCTAAACATCATCGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGTTAGTATTAGCAACCTCCGTCTATCGTCTCAACAAGCTGAAGATGCTCTTTCACTAGGATTGGAAAAACTTCAGCAGAGTTTGGTCCACGACATGGCAGTTGATTCACTGGGTGTAGGAAACTTCGGACTTCAGATGGTTCTTGCGATGGAAAAATTTGAGGCACTAGAAGGTTTTGTAATCCAGGCAGATCACCTTAGGCAACAAACTCTGCTTCACATGTCACGCATCCTTTCAACTCACCAAGCTGCTCGCGGCTTACTGGCTCTCGGGGAATACTTTCATCGTCTTCGCACTCTTTGCTCTCTTTGGTATGCTCGTCCATATGACCTTGCCTAG >Glyma06g11250.2 sequence type=CDS gene model=Glyma06g11250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAATGGACATATACGAGCCATTTCAGCAAGTTAGCCTGTGGGGGGACAACTTTAAACTTGATGGCGGTCTGAATTCAATTGCTTCCCCAATGTTAATGGTTGACAGTACTAGTGTGGAGAACAAGTCTGAGGATATTCCTCAGGAATCAAGAGAGCCTTCTGGTTCTGGAGCCGATCAAGAGGCTACAAATAAAGAAGTTAACAAGATGCTAAGACGCCTAGCTCAGAATCGAGAGGCTGCTCGGAAAAGTAGGCTACGGAAAAAGGCTTACGTTAAACAATTAGAATCAAGCCGTTCGAAGCTCATGCAACTGGAGCTGGAAATTGGGAAAGCAAGAAAGCAGGGTCTGTATATGGGCACTGTATTAGATGCCGGCTATATAGGATCAACATCAGAAACAATAAATCCAGGGATTGTGGCTTTTGAAATTGAATATGGACAATGGGTTGAAGAGCAACAAAGGCGGAACGAAGAACTTAGACATGCATTTCAAGCGCAAGCATCTGATGTACAGCTGAATGTAGTGGTTCAGAGTGTCTTAAACCATTACTCAAATCTTTTCAGAATGAAAGCAGATGCTGCAAAGGCTGATGTCCTCTATTTACTCTCTGGTGTGTGGAAAGCATCAGTGGAGCGCATTTTCCTTTGGATTGGAGGCTCCCGTCCATCACAGCTTCTAAACATCATCGTGCCACAACTTGAGCCTTTGACTGATCAACAAATTGTTAGTATTAGCAACCTCCGTCTATCGTCTCAACAAGCTGAAGATGCTCTTTCACTAGGATTGGAAAAACTTCAGCAGAGTTTGGTCCACGACATGGCAGTTGATTCACTGGGTGTAGGAAACTTCGGACTTCAGATGGTTCTTGCGATGGAAAAATTTGAGGCACTAGAAGGTTTTGTAATCCAGATTAGAAATTGTTACCACAACTTTAAGTTCATCATTTTCACTCAAATTTCCACCCCTGAGCACCTCAGCAACACCAAGTTCATCATATCATGCTAG
>Glyma06g11250.1 sequence type=predicted peptide gene model=Glyma06g11250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMDIYEPFQQVSLWGDNFKLDGGLNSIASPMLMVDSTSVENKSEDIPQESREPSGSGADQEATNKEVNKMLRRLAQNREAARKSRLRKKAYVKQLESSRSKLMQLELEIGKARKQGLYMGTVLDAGYIGSTSETINPGIVAFEIEYGQWVEEQQRRNEELRHAFQAQASDVQLNVVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVSISNLRLSSQQAEDALSLGLEKLQQSLVHDMAVDSLGVGNFGLQMVLAMEKFEALEGFVIQADHLRQQTLLHMSRILSTHQAARGLLALGEYFHRLRTLCSLWYARPYDLA* >Glyma06g11250.2 sequence type=predicted peptide gene model=Glyma06g11250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKMDIYEPFQQVSLWGDNFKLDGGLNSIASPMLMVDSTSVENKSEDIPQESREPSGSGADQEATNKEVNKMLRRLAQNREAARKSRLRKKAYVKQLESSRSKLMQLELEIGKARKQGLYMGTVLDAGYIGSTSETINPGIVAFEIEYGQWVEEQQRRNEELRHAFQAQASDVQLNVVVQSVLNHYSNLFRMKADAAKADVLYLLSGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLTDQQIVSISNLRLSSQQAEDALSLGLEKLQQSLVHDMAVDSLGVGNFGLQMVLAMEKFEALEGFVIQIRNCYHNFKFIIFTQISTPEHLSNTKFIISC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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