Glyma06g11230 - SoyBase

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Report for Sequence Feature Glyma06g11230

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8604422
stop:	8606944
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G36310	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:13669644-13670934 FORWARD LENGTH=404	SoyBase	E_val: 2.33E-156	ISS
GO:0002098	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA wobble uridine modification	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tRNA methyltransferase activity	SoyBase	N/A	ISS
KOG1331	KOG	Predicted methyltransferase	JGI		ISS
PTHR13069	Panther	UNCHARACTERIZED	JGI		ISS
PF08241	PFAM	Methyltransferase domain	JGI		ISS
UniRef100_B9RJD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RJD9_RICCO	SoyBase	E_val: 5.00E-180	ISS
UniRef100_I1KA26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA26_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11230

Paralog	Evidence	Comments
Glyma04g12110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g107100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g11230

Limit To All Plant Sequences

>Glyma06g11230.1   sequence type=CDS   gene model=Glyma06g11230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTTATATTTTCAAGACCCGGCTGAGTTGGACAAAGCGGGTTTTGGAGTGTGTGTTCGGGTCTTGGCCGCCACCGACGAAGATGTTCACTTCAGGATTGTCTCCATCTCTCCTATTCCCCGCATTTCATCACAAACTTTATTCATTTCTCTTCTCTATTCGCAATCATCGCTGTTAACTGGTGCATTCTGGAACACTGGCTGGTTAATGATTCATAGTGTTCTAAAAGCAAGTAGGTTTCAAAATCCACGTAGAGAAGCCCTTGTTTTGACCATTGCTATCAGTGGTTGTGTTTGTCGTTTAGCATTTAGCTCAATGAAAGAAATCAATTGTAAAGTGGATTCTAGTTCATGTACTCTTGCCCCCAATAGGGAACCCTGCATCACAGAGTCCTTATCAGTTAGTGGGAATGGTACTACTACTTCATCTATGAGTGTAAAATCCACCCCTGAAATTGAAAAGAAGTTTGTTCATCATGTATATGATGCTATTGCGCCGCATTTCAGTGCCACCCGGTTTGCCAAGTGGCCGAAGGTTGCAGCATTTTTGTCATCTTTGCCTTTGGGATCTCTTGTCCTCGATGCCGGATGTGGGAATGGGAAATACTTAGGTTTGAATCAGGATTGTTTTTTTATAGGATGTGATATAAGTCCTTCCTTGATTAAGATCTGCTCGGACAGAGAGCATGAAGTTCTGGTCGCGGATGCTGTGAATCTCCCTTACAGGACTGGTTTCGGTGATGCAGCGATATCTATAGCTGTGTTACATCATTTAAGCACTGAAAATAGAAGGAGAAAGGCAATAGAAGAATTGGTCAGAGTTGTTAAAAAGGGTGGCCGTGTTCTGATTACAGTTTGGGCTGTAGAGCAAGAGGATAGTAAGCTGATTACCAAATGGACTCCACTGAATGAGAAGTATGTTGATGAGTGGGTAGGACCAGGTAGTCCTCATACTCGGGCACCTTCATCCTCGTCATTGGAAAGTATCCCCGAAAGTGAGGTGAGTACCTCTGGTGAGCACATGGAAGTTTGCCATGAGGCACATGCATCAAGATATTTGGAGGAAGAAAAAAATATAAAGAATCAACAGGAATACTTTGTTCCCTGGCATTTACCTTATCATCGTGCTGAAATCAGTGGCGCTTCTGCCGAAGCTCTTGCTGCTGGTCTGGCAACGAAAGATGACAAAAAAGGTGCTGTGGTGTATAATCGATATTATCATGTTTTTAGTGAAGGCGAGCTTGAAAGTTTGACAACTGAAATAAACAATGCTATAATTGTTGATCAGTTTTTTGATAAATCCAACTGGTGCATTATTCTAGAGAAGACAGTATGA

Predicted protein sequences of Glyma06g11230

Limit To All Plant Sequences

>Glyma06g11230.1   sequence type=predicted peptide   gene model=Glyma06g11230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLYFQDPAELDKAGFGVCVRVLAATDEDVHFRIVSISPIPRISSQTLFISLLYSQSSLLTGAFWNTGWLMIHSVLKASRFQNPRREALVLTIAISGCVCRLAFSSMKEINCKVDSSSCTLAPNREPCITESLSVSGNGTTTSSMSVKSTPEIEKKFVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLGSLVLDAGCGNGKYLGLNQDCFFIGCDISPSLIKICSDREHEVLVADAVNLPYRTGFGDAAISIAVLHHLSTENRRRKAIEELVRVVKKGGRVLITVWAVEQEDSKLITKWTPLNEKYVDEWVGPGSPHTRAPSSSSLESIPESEVSTSGEHMEVCHEAHASRYLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSEGELESLTTEINNAIIVDQFFDKSNWCIILEKTV*

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