Glyma06g11190 - SoyBase

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Report for Sequence Feature Glyma06g11190

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8572153
stop:	8573383
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08570	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr4:5455123-5455975 REVERSE LENGTH=150	SoyBase	E_val: 1.00E-79	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF14	Panther	COPPER CHAPERONE-RELATED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_I1KA22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA22_SOYBN	SoyBase	E_val: 7.00E-108	ISS
UniRef100_O81464	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heavy-metal-associated domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=O81464_ARATH	SoyBase	E_val: 5.00E-77	ISS

Proteins Associated with Glyma06g11190

Locus	Gene Symbol	Protein Name
	CCH	heavy-metal-associated domain-containing protein

Expression Patterns of Glyma06g11190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11190

Paralog	Evidence	Comments
Glyma04g12040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g106700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g11190

Limit To All Plant Sequences

>Glyma06g11190.2   sequence type=transcript   gene model=Glyma06g11190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAATTACTTTGTATCCTTTCTCTTCGTTATGATATTGTTCACTTGGCCATATTTGTTTCTCACCGCATACACCCTACCGTTTGAAAACAAAAAGAAAAAACGACTAGTCATTTTCTATATATATTTTAAGATCCATATTAAAACAGTCTTTCTTAATAATAAGCTTCAACTTAAGCCATAGATTTTCTTCTTACTTGACCTAGCTAGATTGGCTGATATATTACCTATATATACACACTCACACTCACAAAGGTTGGATAATAATTTATCACATATCAGTATCCATCATCTTGAGCTGACACGAGGAGAATCAGAGATGGGAGTACAAGGCACTATGGAATACTTATCTGACTTACTTAGCACCAAAAAGAAGAAGAAGAAGAAGCAAGTCCAAACTGTAGCACTGAAAATCAGAATGGACTGTGAAGGCTGTGCACGCAAGGTCAAGCATGTTCTTTTTGGTGTTAAAGGAGCTAAGTCGGTGGAAGTGGACTTGAAGCAGCAGAAAGCAACAGTGACAGGATATGTTGAGCCAAAGAAAGTGCTTAAGGCTGCTCAGTCTACTAAGAAGAAGGTTGAGCTATGGCCATATGTTCCGTACAGTATGGTGGCTAACCCATATATTTCTCAAGCCTACGATAAGAAGGCACCTCCTAATATGGTGAGGAAGGTGGCTGACACTGCCAACATATCAGAAACCACCGTGGATGATCGCTACATACAAATATTCAGTGATGAAAACCCAAATGCCTGCTCTATCATGTAAAATATTAATTGATTAATATTTGTGTAGTCAATTTCACATTAAATATTGTATAAGAAATAAATATTAAAAACAAAAGGGTATGGTTTTGTACTTTTGTGTAAATTATATGATAGTCGATAATTTTGCTTGGATTTTGAGTATAATTAATGATTGATTGTTTTGTAGCATACTTTCATTATCTTAGGCTTAATGATTGTTTGGTGGGAAGCATTAGAGATGAACACTTGGGGGATCTCAAAGGACTGCAACTCACGCTATCGTCATTGTTACATTTTAATTAAAATCATGTTAGTGACATTTTGTTAGC

Coding sequences of Glyma06g11190

Limit To All Plant Sequences

>Glyma06g11190.1   sequence type=CDS   gene model=Glyma06g11190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTACAAGGCACTATGGAATACTTATCTGACTTACTTAGCACCAAAAAGAAGAAGAAGAAGAAGCAAGTCCAAACTGTAGCACTGAAAATCAGAATGGACTGTGAAGGCTGTGCACGCAAGGTCAAGCATGTTCTTTTTGGTGTTAAAGGAGCTAAGTCGGTGGAAGTGGACTTGAAGCAGCAGAAAGCAACAGTGACAGGATATGTTGAGCCAAAGAAAGTGCTTAAGGCTGCTCAGTCTACTAAGAAGAAGGTTGAGCTATGGCCATATGTTCCGTACAGTATGGTGGCTAACCCATATATTTCTCAAGCCTACGATAAGAAGGCACCTCCTAATATGGTGAGGAAGGTGGCTGACACTGCCAACATATCAGAAACCACCGTGGATGATCGCTACATACAAATATTCAGTGATGAAAACCCAAATGCCTGCTCTATCATCATACTTTCATTATCTTAG

>Glyma06g11190.2   sequence type=CDS   gene model=Glyma06g11190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTACAAGGCACTATGGAATACTTATCTGACTTACTTAGCACCAAAAAGAAGAAGAAGAAGAAGCAAGTCCAAACTGTAGCACTGAAAATCAGAATGGACTGTGAAGGCTGTGCACGCAAGGTCAAGCATGTTCTTTTTGGTGTTAAAGGAGCTAAGTCGGTGGAAGTGGACTTGAAGCAGCAGAAAGCAACAGTGACAGGATATGTTGAGCCAAAGAAAGTGCTTAAGGCTGCTCAGTCTACTAAGAAGAAGGTTGAGCTATGGCCATATGTTCCGTACAGTATGGTGGCTAACCCATATATTTCTCAAGCCTACGATAAGAAGGCACCTCCTAATATGGTGAGGAAGGTGGCTGACACTGCCAACATATCAGAAACCACCGTGGATGATCGCTACATACAAATATTCAGTGATGAAAACCCAAATGCCTGCTCTATCATGTAA

Predicted protein sequences of Glyma06g11190

Limit To All Plant Sequences

>Glyma06g11190.1   sequence type=predicted peptide   gene model=Glyma06g11190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVQGTMEYLSDLLSTKKKKKKKQVQTVALKIRMDCEGCARKVKHVLFGVKGAKSVEVDLKQQKATVTGYVEPKKVLKAAQSTKKKVELWPYVPYSMVANPYISQAYDKKAPPNMVRKVADTANISETTVDDRYIQIFSDENPNACSIIILSLS*

>Glyma06g11190.2   sequence type=predicted peptide   gene model=Glyma06g11190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVQGTMEYLSDLLSTKKKKKKKQVQTVALKIRMDCEGCARKVKHVLFGVKGAKSVEVDLKQQKATVTGYVEPKKVLKAAQSTKKKVELWPYVPYSMVANPYISQAYDKKAPPNMVRKVADTANISETTVDDRYIQIFSDENPNACSIM*

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