Glyma06g11140 - SoyBase

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Report for Sequence Feature Glyma06g11140

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8491473
stop:	8496609
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22150	AT	Annotation by Michelle Graham. TAIR10: sulfate transporter 1;3 \| chr1:7818361-7821344 FORWARD LENGTH=656	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0008272	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0008271	GO-mf	Annotation by Michelle Graham. GO Molecular Function: secondary active sulfate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015116	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0236	KOG	Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family)	JGI		ISS
PTHR11814	Panther	SULFATE TRANSPORTER	JGI		ISS
PTHR11814:SF46	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00916	PFAM	Sulfate transporter family	JGI		ISS
PF01740	PFAM	STAS domain	JGI		ISS
UniRef100_G7KA24	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sulfate transporter n=1 Tax=Medicago truncatula RepID=G7KA24_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KA20	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA20_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11140

Paralog	Evidence	Comments
Glyma04g11582	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g106100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g11140

Limit To All Plant Sequences

>Glyma06g11140.2   sequence type=transcript   gene model=Glyma06g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTATCAAATTGCTAGACGATCATCTGACTTTAGGTGCATTAATTCCAGGGTAGTTTGGTCAGGATTGAAAACTTTGCTTTGCAATGTATGATTTTGACATGTATTCGATCCGTTTCACACATTAATTGGGTCTAGTTTTTCAATTTCAGCCTGAGAACATTGACCTGAAAGATAAAGTCTTTGAGGTTATAATCCAATAGCTTCACAGCAGTTACCTGCTTAAGAAGGCATCACAGCTTGAACAAGTGACCATTCAAATCTTCTGTCACATATCCCCTTCTCTTCTATTCAGATTGAAGATCACGGTTGATGTCTTCAATGGGTCCTCCTGCTGATGAAAATCTTGAAACAAAAGAGATCGATCTCAGAAGTATGTCATCTTCTTCACTTGGTCAGGCACCACAAGCCCACAAAGTAGCAATTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAATCCACTATAAAAGAAACATTCTTTTCTGATGATCCTCTAAGACCCTTCAAAGATCAACCTAGATCAAGGAAGATTAGGCTCGGTATTGAGGCCATATTCCCAATACTTAGTTGGGGGAGAAGTTACAACCTTAAAAAATTTAGAGGAGATATAATATCCGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGGCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCAGTGGCAGTGGTTTCACTCTTGTTGGGGACCTTACTAAGTAATGAGATTGATCCTAAAACAAATCCAACAGAATATCAGCGACTTGCTTTTACAGCAACTTTTTTTGCTGGGATTACTCAAGCAACACTTGGTGTTCTTAGGTTAGGATTCTTGATTGACTTCCTATCACATGCTGCTATTGTTGGTTTTATGGGGGGAGCTGCTATCACAATTGCCCTCCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTGCACACTTCACAACGGACACTGATATTGTCCATGTGATGCGTTCAGTATTCTCAGAAGCCCATCATGGATGGAACTGGCAAACTATACTCATCGGAGCTAGCTTTTTGGGTTTTCTTCTGGTTGCCAAATATATTGGAAAGAAAAACAAGAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATTTTATCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGACATTGTAAGAAAAATAGAAAAAGGCATCAATCCTTCATCTGTTAAAGATATTTATTTTACCGGAGAATACCTTGGAAAAGGTTTTAAAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAATTGGATGGAAACAAAGAAATGGTGGCATTAGGAACAATGAATGTTGTTGGTTCCCTGACTTCGTGTTATGTAGCAACAGGTTCTTTCTCTCGGTCCGCGGTAAATTACATGGCAGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAGTGGTTGTGTTATTAACCCTGGAATTCATCACTCCTCTTTTCAAGTACACCCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAGCCTTGTAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCCTTCTTTGGGGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTGTCTCTATTTCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCTATTCTAGGGAAGATTCCTAGGACTACTGTCTACAGAAACATTCAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGACATTAAGATGGTTGATGGACGAAGAAGAACAAGAAAAAGGAGACTACCGCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACCGACATAGACACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGGGTGTTGAGCTTGTTTTGGCAAATCCTGGGTCAGCAGTGACAGACAAGCTTTACGCATCCAGTTTTGCAAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTATTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCTTGAAAAATATATATGAATTTTGCTGTTGATCTAGAGAAAAAAAAATAGGGACACATATATAGATGAAATGTTGTGGGGGAATAGAAATAGAGACCAGAAGTTTTCAGTTTACTAGAGTTAGTTAGTGAAGGATATATGAAGAAGAAGGTGTGAAGGATGAGAAGTGAGATGAGATATTGGTCACTACAAAAAGCTATAGTAGAAGAAAGTGGCCTATCCGATTCTGCTACAGTTAGTTAGTGCTACTACTAGCTCCACCATTCTTATCTCAAAAGTGTTAGAAATTAAATACTATAAAATAAAAGAGATAAAGTTAAGGTGCATGCACCAGATAGGCATTAACTCGTTCTCTTGTTTTACTTGGATGTCCTTAGAATCTAACTCAGGTCTATGTTGTGTGAAGAATGGTCTCCTACGTACTCTCCTTTTCACTAGGGATCGAAGTTGTTGTAATGTTGTTCTTGTTCATCCCTGCTACCCGTCTCATTGAGCCATTGTCCCCTCATATAAAAGAGTGTAGAACAGTAAAAAATTTGTAGAGTGTTTATTGTTCCATTTCGTGTTTGCAAGTCTTGCTGTAATTATTTAGTACGTTTGAGCTTTGAATAAAAATAATAGAAGACAAGTACGGTAGGTGGATCTTTAAAGGTGTTGTCGTGGCTATTGCATGAACGAAGAGGCAAAACAAAGCCAGATTCATTCAAGCAAGTGAAGCAGACTTCCAAAAAGTTCTTCTTTTTTGAAAAAAAGTATTCAAAAATCATATTCTAATGTAAAAAGTACAAGAAAC

Coding sequences of Glyma06g11140

Limit To All Plant Sequences

>Glyma06g11140.1   sequence type=CDS   gene model=Glyma06g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAATGGGTCCTCCTGCTGATGAAAATCTTGAAACAAAAGAGATCGATCTCAGAAGTATGTCATCTTCTTCACTTGGTCAGGCACCACAAGCCCACAAAGTAGCAATTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAATCCACTATAAAAGAAACATTCTTTTCTGATGATCCTCTAAGACCCTTCAAAGATCAACCTAGATCAAGGAAGATTAGGCTCGGTATTGAGGCCATATTCCCAATACTTAGTTGGGGGAGAAGTTACAACCTTAAAAAATTTAGAGGAGATATAATATCCGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGGCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCAGTGGCAGTGGTTTCACTCTTGTTGGGGACCTTACTAAGTAATGAGATTGATCCTAAAACAAATCCAACAGAATATCAGCGACTTGCTTTTACAGCAACTTTTTTTGCTGGGATTACTCAAGCAACACTTGGTGTTCTTAGGTTAGGATTCTTGATTGACTTCCTATCACATGCTGCTATTGTTGGTTTTATGGGGGGAGCTGCTATCACAATTGCCCTCCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTGCACACTTCACAACGGACACTGATATTGTCCATGTGATGCGTTCAGTATTCTCAGAAGCCCATCATGGATGGAACTGGCAAACTATACTCATCGGAGCTAGCTTTTTGGGTTTTCTTCTGGTTGCCAAATATATTGGAAAGAAAAACAAGAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATTTTATCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGACATTGTAAGAAAAATAGAAAAAGGCATCAATCCTTCATCTGTTAAAGATATTTATTTTACCGGAGAATACCTTGGAAAAGGTTTTAAAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAATTGGATGGAAACAAAGAAATGGTGGCATTAGGAACAATGAATGTTGTTGGTTCCCTGACTTCGTGTTATGTAGCAACAGGTTCTTTCTCTCGGTCCGCGGTAAATTACATGGCAGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAGTGGTTGTGTTATTAACCCTGGAATTCATCACTCCTCTTTTCAAGTACACCCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAGCCTTGTAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCCTTCTTTGGGGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTGTCTCTATTTCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCTATTCTAGGGAAGATTCCTAGGACTACTGTCTACAGAAACATTCAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGACATTAAGATGGTTGATGGACGAAGAAGAACAAGAAAAAGGAGACTACCGCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACCGACATAGACACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGGGTGTTGAGCTTGTTTTGGCAAATCCTGGGTCAGCAGTGACAGACAAGCTTTACGCATCCAGTTTTGCAAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTATTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCTTGA

>Glyma06g11140.2   sequence type=CDS   gene model=Glyma06g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCAATGGGTCCTCCTGCTGATGAAAATCTTGAAACAAAAGAGATCGATCTCAGAAGTATGTCATCTTCTTCACTTGGTCAGGCACCACAAGCCCACAAAGTAGCAATTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAATCCACTATAAAAGAAACATTCTTTTCTGATGATCCTCTAAGACCCTTCAAAGATCAACCTAGATCAAGGAAGATTAGGCTCGGTATTGAGGCCATATTCCCAATACTTAGTTGGGGGAGAAGTTACAACCTTAAAAAATTTAGAGGAGATATAATATCCGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGGCTCCACAGTATGGACTGTACTCCAGTTTTGTTCCACCACTGATTTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCAGTGGCAGTGGTTTCACTCTTGTTGGGGACCTTACTAAGTAATGAGATTGATCCTAAAACAAATCCAACAGAATATCAGCGACTTGCTTTTACAGCAACTTTTTTTGCTGGGATTACTCAAGCAACACTTGGTGTTCTTAGGTTAGGATTCTTGATTGACTTCCTATCACATGCTGCTATTGTTGGTTTTATGGGGGGAGCTGCTATCACAATTGCCCTCCAACAGCTTAAGGGTTTCCTTGGCATTAAAACTGCACACTTCACAACGGACACTGATATTGTCCATGTGATGCGTTCAGTATTCTCAGAAGCCCATCATGGATGGAACTGGCAAACTATACTCATCGGAGCTAGCTTTTTGGGTTTTCTTCTGGTTGCCAAATATATTGGAAAGAAAAACAAGAAATTCTTCTGGGTGCCAGCAATTGCTCCATTGATATCCGTTATTTTATCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGCAAGGAGTAGACATTGTAAGAAAAATAGAAAAAGGCATCAATCCTTCATCTGTTAAAGATATTTATTTTACCGGAGAATACCTTGGAAAAGGTTTTAAAATTGGCATCGTGGCTGGCATGATAGCATTGACTGAAGCCACAGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAATTGGATGGAAACAAAGAAATGGTGGCATTAGGAACAATGAATGTTGTTGGTTCCCTGACTTCGTGTTATGTAGCAACAGGTTCTTTCTCTCGGTCCGCGGTAAATTACATGGCAGGCTGCCAAACTGCAGTCTCTAATATTGTGATGTCAGTGGTTGTGTTATTAACCCTGGAATTCATCACTCCTCTTTTCAAGTACACCCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCATCAGCCTTGTAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGATTTTGTTGCTTGCATGGGTGCCTTCTTTGGGGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTGTCTCTATTTCCTTTGCAAAGATCCTATTACAAGTCACAAGGCCCCGAACTGCTATTCTAGGGAAGATTCCTAGGACTACTGTCTACAGAAACATTCAACAATATCCAGAAGCTAGTAAGATTCCAGGTGTACTGATTGTAAGAGTCGATTCTGCAATATATTTTTCCAACTCCAATTATGTTAAAGAAAGGACATTAAGATGGTTGATGGACGAAGAAGAACAAGAAAAAGGAGACTACCGCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACCGACATAGACACAAGTGGCATCCAAGCCTTTGAAGAGTTACACAGAAGTCTTGAGAAGAAGGGTGTTGAGCTTGTTTTGGCAAATCCTGGGTCAGCAGTGACAGACAAGCTTTACGCATCCAGTTTTGCAAACACGATTGGCGAGGACAAGATCTTCCTCACTGTTGCAGAGGCTATTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCTTGA

Predicted protein sequences of Glyma06g11140

Limit To All Plant Sequences

>Glyma06g11140.1   sequence type=predicted peptide   gene model=Glyma06g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMGPPADENLETKEIDLRSMSSSSLGQAPQAHKVAIPPRQNLFKEFQSTIKETFFSDDPLRPFKDQPRSRKIRLGIEAIFPILSWGRSYNLKKFRGDIISGLTIASLCIPQDIGYAKLAHLAPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEIDPKTNPTEYQRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTAHFTTDTDIVHVMRSVFSEAHHGWNWQTILIGASFLGFLLVAKYIGKKNKKFFWVPAIAPLISVILSTFFVFITRADKQGVDIVRKIEKGINPSSVKDIYFTGEYLGKGFKIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGTMNVVGSLTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVLLTLEFITPLFKYTPNAILSAIIISAVISLVDYEAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKIPGVLIVRVDSAIYFSNSNYVKERTLRWLMDEEEQEKGDYRTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKKGVELVLANPGSAVTDKLYASSFANTIGEDKIFLTVAEAIAYCSPKVVEDP*

>Glyma06g11140.2   sequence type=predicted peptide   gene model=Glyma06g11140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSMGPPADENLETKEIDLRSMSSSSLGQAPQAHKVAIPPRQNLFKEFQSTIKETFFSDDPLRPFKDQPRSRKIRLGIEAIFPILSWGRSYNLKKFRGDIISGLTIASLCIPQDIGYAKLAHLAPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEIDPKTNPTEYQRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKTAHFTTDTDIVHVMRSVFSEAHHGWNWQTILIGASFLGFLLVAKYIGKKNKKFFWVPAIAPLISVILSTFFVFITRADKQGVDIVRKIEKGINPSSVKDIYFTGEYLGKGFKIGIVAGMIALTEATAIGRTFASMKDYQLDGNKEMVALGTMNVVGSLTSCYVATGSFSRSAVNYMAGCQTAVSNIVMSVVVLLTLEFITPLFKYTPNAILSAIIISAVISLVDYEAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVSISFAKILLQVTRPRTAILGKIPRTTVYRNIQQYPEASKIPGVLIVRVDSAIYFSNSNYVKERTLRWLMDEEEQEKGDYRTKIQFLIVEMSPVTDIDTSGIQAFEELHRSLEKKGVELVLANPGSAVTDKLYASSFANTIGEDKIFLTVAEAIAYCSPKVVEDP*

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