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Report for Sequence Feature Glyma06g11131

Feature Type:gene_model
Chromosome:Gm06
Start:8484012
stop:8488146
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g11131
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78010AT Annotation by Michelle Graham. TAIR10: tRNA modification GTPase, putative | chr1:29333535-29336297 FORWARD LENGTH=560 SoyBaseE_val: 0ISS
GO:0006184GO-bp Annotation by Michelle Graham. GO Biological Process: GTP catabolic process SoyBaseN/AISS
GO:0006400GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA modification SoyBaseN/AISS
GO:0006897GO-bp Annotation by Michelle Graham. GO Biological Process: endocytosis SoyBaseN/AISS
GO:0007264GO-bp Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
KOG1191 KOG Mitochondrial GTPase JGI ISS
PTHR11649Panther MSS1/TRME-RELATED GTP-BINDING PROTEIN JGI ISS
PTHR11649:SF28Panther THIOPHENE AND FURAN OXIDATION PROTEIN THDF JGI ISS
PF01926PFAM GTPase of unknown function JGI ISS
PF10396PFAM GTP-binding protein TrmE N-terminus JGI ISS
UniRef100_G8A389UniRef Annotation by Michelle Graham. Most informative UniRef hit: tRNA modification GTPase mnmE n=1 Tax=Medicago truncatula RepID=G8A389_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A8FAUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A8FA related cluster n=1 Tax=unknown RepID=UPI000233A8FA SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g11131
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g11131 not represented in the dataset
Glyma06g11131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11131
ParalogEvidenceComments
Glyma04g11560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11131 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g106000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g11131
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g11131
>Glyma06g11131.1   sequence type=CDS   gene model=Glyma06g11131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCAGTGGAAAACGAAGATTGTTAGATAGACCATACAGTAGCCTCAGCAAGACAGAAACCGAAACTCGAGCGGAAATGGCTTCTTTCCGCGCCGTGCTTCGTCACACTCACATATACATAAGCACGTTCAGCTGCTTCACTCCACCGCCGCGCACACCTACTATGGCGTTATTTTTAAGTCACGGCGCCACGCGGCACTGTCTTATTCCCTCCAAACCCTCCAGAACCGTTAAATCCCGAGCCAGTTCAGACAACTACAACTTAGTGTTGAAGAAAGACGAGCGCTTGGGAACTGGAGAATGCGTTGACGAGGTTGCAAGTGGGACCACAATTGCGGCCATCGTAACTTCCGTGGGAGGCCCACCTGCCGCCGTCGGAATCGTTCGACTTTCGGGCCCGGGCGCGGTGTCCATCGTGGGCCGATTGTTTCGGCCCGCAAGGAAGACGTGGCGGCCCGCCAGCCACGTCGTCGAATACGGCGTCGTCTTGGACTCCGACGGCAACGTCATCGATGAGGTCTTGGCGGTGCCGATGCTGGCCCCGAGGTCGTACACGCGCGAAGACGTGGTTGAGCTTCAGTGCCACGGCAGCGAAGTGTGTCTGCGCCGCGTGCTTAGGACTTGTTTGGAAGCCGGAGCAACACTCGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGATTAGATCTCTCCCAAGCCGAAAACGTCGCGAGATTAATCGCCGCGAAATCTGTGGCTGCTGCAGATGCTGCATTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGGAGTCAGTGCATTGAATTGCTCACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCACTGGATTTGAATCTGACTATGGATAAAATCCATAACATGTCAAGAGAGGTTGAGAATGCGTTGGAAACGGCAAATTATGATAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGGCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTCAGTGGCATTCCTATAACCCTTCTTGATACAGCAGGCATCAGGGACACGGATGACATTGTGGAAAAGATTGTTTACATGGAACACCTGGAAAAAGTGAAAATCAGTGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTCATCCTTGTGGTCAACAAGATAGACTGTAAACCTTGTGCTGAGACCAAATGGGACAAAGGATGCCAGAGTCATATTTTCAGTAAACGTGTGTTTACATGTGCCGTTACTGGTCAAGGATTGCATGACTTAGAGAGGGCAGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGACTTGAGGGATGCGGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG
Predicted protein sequences of Glyma06g11131
>Glyma06g11131.1   sequence type=predicted peptide   gene model=Glyma06g11131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSGKRRLLDRPYSSLSKTETETRAEMASFRAVLRHTHIYISTFSCFTPPPRTPTMALFLSHGATRHCLIPSKPSRTVKSRASSDNYNLVLKKDERLGTGECVDEVASGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIVGRLFRPARKTWRPASHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLTMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIVYMEHLEKVKISVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETKWDKGCQSHIFSKRVFTCAVTGQGLHDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*






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