Glyma06g11090 - SoyBase

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Report for Sequence Feature Glyma06g11090

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8457074
stop:	8458486
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78020	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF581) \| chr1:29338787-29339491 FORWARD LENGTH=162	SoyBase	E_val: 4.00E-39	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF04570	PFAM	Protein of unknown function (DUF581)	JGI		ISS
UniRef100_I1KA17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA17_SOYBN	SoyBase	E_val: 7.00E-111	ISS
UniRef100_Q9SGZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28K19.24 n=1 Tax=Arabidopsis thaliana RepID=Q9SGZ8_ARATH	SoyBase	E_val: 2.00E-36	ISS

Expression Patterns of Glyma06g11090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11090

Paralog	Evidence	Comments
Glyma04g11460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g105800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g11090

Limit To All Plant Sequences

>Glyma06g11090.1   sequence type=CDS   gene model=Glyma06g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTGGGGAAGAGACCTCGTCCTCCAATTATGAAGAGAACAACAAGCATGTCGGAAATAACCTTCGATCTGAACACGTCCTTGGACGATGATCCGAACAACTCCGTGAAGGGACCAGGAGGAGATGGGCCTCCTGTTGGGCTCAACGGTTTAGATCAGAACAGGGTTTGGGCCATGGTTTCACCCAGAAACCACCATAGAAGGCAATATTCCGAGGATACCCCTGGCTTCTTGCGCGTTTGCTTTCTCTGCAAACGCCGTTTAGTACCCGGCCGTGACATCTTCATGTACAAAGGTGATAGTGCTTTCTGCAGTTCAGAATGCCGTGAACAGCAGATGAAGCATGATGAGAGAAAAGATAAGTGTCGTGTGGCATCATCAAAGAAACAAGTTGCGGCAAAGCCTAATTCTGGGTCTCAAGTTACTACTAATACTAAAGGCGAAACCGTGGTTGCCTTGTAG

Predicted protein sequences of Glyma06g11090

Limit To All Plant Sequences

>Glyma06g11090.1   sequence type=predicted peptide   gene model=Glyma06g11090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLGKRPRPPIMKRTTSMSEITFDLNTSLDDDPNNSVKGPGGDGPPVGLNGLDQNRVWAMVSPRNHHRRQYSEDTPGFLRVCFLCKRRLVPGRDIFMYKGDSAFCSSECREQQMKHDERKDKCRVASSKKQVAAKPNSGSQVTTNTKGETVVAL*

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