SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g11060): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g11060): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g11060

Feature Type:gene_model
Chromosome:Gm06
Start:8437752
stop:8439979
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g11060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G08690AT Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr4:5551521-5552713 REVERSE LENGTH=301 SoyBaseE_val: 3.00E-31ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
PTHR10174Panther RETINALDEHYDE BINDING PROTEIN-RELATED JGI ISS
PTHR10174:SF78Panther SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLY JGI ISS
UniRef100_G8A376UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol transfer protein n=2 Tax=Medicago truncatula RepID=G8A376_MEDTR SoyBaseE_val: 2.00E-39ISS
UniRef100_I1KA14UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA14_SOYBN SoyBaseE_val: 4.00E-130ISS

Expression Patterns of Glyma06g11060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g11060 not represented in the dataset
Glyma06g11060 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11060
ParalogEvidenceComments
Glyma04g11370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g11060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g11060
>Glyma06g11060.1   sequence type=CDS   gene model=Glyma06g11060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTGGTAATATCTCAAGAACAGCAGGCAAAGATCAATGAGGTGAGAAGGTTGATAGGGCCACTATCTGATAAGGAATCTTTGTACTGTTCTGATGCTTCCATCTCAAGGTATTTAAGGTTGCAATATTGGAATGTCAAGAAGGCAGCTCAAATGTTGAAACAGAGCCTCAAATGGAGAAAAGAATACAAACCTGAAGAAATTCGCTGGGAAGAGGTTGCTGAGGAAGCAGAGACAGGGATGATGTATAAACCAAATTATCATGACTATTATGCTTATTTAATTAATAAGGATGTAATCCTGCTATATAAGGGTGATTATGAATCTAGGGCCATTTGTAATAGACTGAGACTATTAATAAAGTTTGGCTATTCGAACGACCACAACACAAAGAAGATTATGGAGGATTTGTTTGATAAGGATAATCTTGAATCTGCATTTGGTGGGAATGCATTCTTTCTAGACACAGGCCAAGTCTATGTCATCAGTTGCACACAATGCTCCTCTAGATTCAATCAGGTTAGATGCAGTTTCTGA
Predicted protein sequences of Glyma06g11060
>Glyma06g11060.1   sequence type=predicted peptide   gene model=Glyma06g11060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLVISQEQQAKINEVRRLIGPLSDKESLYCSDASISRYLRLQYWNVKKAAQMLKQSLKWRKEYKPEEIRWEEVAEEAETGMMYKPNYHDYYAYLINKDVILLYKGDYESRAICNRLRLLIKFGYSNDHNTKKIMEDLFDKDNLESAFGGNAFFLDTGQVYVISCTQCSSRFNQVRCSF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo