Report for Sequence Feature Glyma06g11050
Feature Type: gene_model
Chromosome: Gm06
Start: 8430913
stop: 8433270
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g11050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G08690 AT
Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr4:5551521-5552713 REVERSE LENGTH=301
SoyBase E_val: 1.00E-107 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0042546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
KOG1470
KOG
Phosphatidylinositol transfer protein PDR16 and related proteins
JGI ISS
PTHR10174 Panther
RETINALDEHYDE BINDING PROTEIN-RELATED
JGI ISS
PTHR10174:SF78 Panther
SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLY
JGI ISS
PF00650 PFAM
CRAL/TRIO domain
JGI ISS
PF03765 PFAM
CRAL/TRIO, N-terminus
JGI ISS
UniRef100_G7KA58 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Clavesin n=1 Tax=Medicago truncatula RepID=G7KA58_MEDTR
SoyBase E_val: 6.00E-135 ISS
UniRef100_I1KA13 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA13_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g11050
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g11050
Paralog Evidence Comments
Glyma04g11360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g11050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g105500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g11050
Coding sequences of Glyma06g11050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g11050.1 sequence type=CDS gene model=Glyma06g11050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTGTGGATTTGAACAAAACTGCCTCCAACAGTCATGATAAAATGGCAATATCAGCAGAACAGCAGGCAAAGATCATTGAGGTGAGAGGGTTGATAGGGCCACTATCTGATAAGGAATCTGTGTACTGTTCTGATGCTTCAATCTCAAGGTATTTAAGGGCACGAAATTGGAATGTCAAGAAGGCAGCTCAAATGTTGAAGCAAAGCCTAAAATGGAGAAAAGAATACAAGCCTCAAGAGATCCGCTGGGAAGAGGTTGCTGCTGTAGCAGAGAAAGGGATGTTGTATAGACCAAATTATTCTGACAAGTATGGGAGACCAGTGATTGTAATGAGACCTTGTAACAAGAAATCAACACCAGCACAGGACATGATTAAGTATTTTGTATACTGCATGGAGAATGCCATTATAAATCTGCCACCACACGAGGAACAGTTGGCCTGGCTGATAGATTTCCAGGGTGTCAAGATGTCAGATGTGTCATTCAAGACGTCACGTGAAACTGTCCATATATTACAAGAATATTATCCAAAGCATCTGGGTTTGGCAATGCTGTACAAAGCACCTAGGATCTTCCAACCATTCTTCTCGATGCTAAGGCCATTTCTAGAGACAGAGCTTTACAATAAAGTAAAGTTTGGGTATTCGGACGACCACAACACAAAGAAGATGTTGGAGGATTTGTTTGATATGGATAAACTTGAATCTGCATTTGGTGGGAATGATGATACAGGATTTGACATGAATAAATATGCAGAAAGAATGAAAGAGGATGAAAATAAGATTCTTTCTTTCTGGACACAGGCCAAGTCTGTGTCTTAA
Predicted protein sequences of Glyma06g11050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g11050.1 sequence type=predicted peptide gene model=Glyma06g11050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSVDLNKTASNSHDKMAISAEQQAKIIEVRGLIGPLSDKESVYCSDASISRYLRARNWNVKKAAQMLKQSLKWRKEYKPQEIRWEEVAAVAEKGMLYRPNYSDKYGRPVIVMRPCNKKSTPAQDMIKYFVYCMENAIINLPPHEEQLAWLIDFQGVKMSDVSFKTSRETVHILQEYYPKHLGLAMLYKAPRIFQPFFSMLRPFLETELYNKVKFGYSDDHNTKKMLEDLFDMDKLESAFGGNDDTGFDMNKYAERMKEDENKILSFWTQAKSVS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
