Glyma06g11040 - SoyBase

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Report for Sequence Feature Glyma06g11040

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8414397
stop:	8418588
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78060	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolase family protein \| chr1:29349796-29352868 REVERSE LENGTH=767	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PF00933	PFAM	Glycosyl hydrolase family 3 N terminal domain	JGI		ISS
PF01915	PFAM	Glycosyl hydrolase family 3 C terminal domain	JGI		ISS
UniRef100_G8A378	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylan 1 4-beta-xylosidase n=1 Tax=Medicago truncatula RepID=G8A378_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KA12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g11040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g105300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g11040

Limit To All Plant Sequences

>Glyma06g11040.1   sequence type=CDS   gene model=Glyma06g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTCAGCATCCTTTACCTGAGTCTGAGTCTCCTCACTGTCACTGTTCAGTCATCTAAACCAGAAGCACCTTTCGCTTGCGACTTCTCCAACCCTTCATCCAGATCCTACCCATTCTGCAACCCCAAGCTCCCCATTCCCCAAAGAACCAAAGACCTTCTCTCCCGTCTCACCTTGGACGAAAAGCTCTCCCAGCTGGTCAACACCGCCCCTCCCATCCCCCGCCTCGGCATCCCCGCCTACCAGTGGTGGAGCGAAGCCCTCCACGGCGTCTCAGGAGTCGGCCCCGGCATCCTCTTCGACAACAACTCCACCATCTCCTCCGCCACCAGCTTCCCTCAGGTCATCCTCACCGCCGCCTCCTTCGACTCCCGCCTCTGGTACCGAATCGGCCACGCCATCGGCATCGAAGCCAGGGCAATCTTCAATGCTGGCCAAGCCAATGGCCTCACGTTCTGGGCTCCTAATATCAACATCTTTAGGGACCCAAGATGGGGCAGAGGCCAAGAGACTGCTGGTGAAGACCCTCTCCTCACTTCTCGCTATGCGGTTTCTTTTGTCAGAGGCCTTCAAGGAGATTCCTTTAAGGGAGCCCATCTTCTAGCCTCTGCGTGCTGCAAGCATTTCACCGCTTATGATTTGGACAATTGGAAGGGCGTCGATCGCTTTGTCTTCGATGCTCGCGTATCTTTGCAAGATTTAGCGGACACATACCAGCCTCCGTTTCAGAGTTGCGTGCAGCAAGGACGAGCCAGTGGGATAATGTGTGCTTACAATCGTGTCAACGGAGTTCCCAACTGTGCTGATTACGGTCTGTTAACCCAAACCGCCAGAAATCAATGGGATTTCAATGGGTATATCACTTCGGATTGTGGAGCAGTGGGGTTCATACACGACAGGCAAAGGTATGCAAAATCACCAGAGGATGTTGTAGCCGATGTTCTTCGGGCTGGGATGGATTTGGAATGTGGTTCTTATTTGACATATCACGCTAAATCAGCAGTGTTGCAGAAAAAGTTAGGCATGTCTGAAATAGACCGTGCCCTTCAGAATCTGTTCTCTATTAGAATGAGGCTAGGCCTATTTGATGGAAATCCAACAAGGCTCTCATTCGGCTTGATTGGCTCCAATCATGTATGTTCCAAAGAGCACCAATATCTGGCTCTTGAAGCTGCAAGAAATGGCATAGTCCTCTTAAAAAACTCTCCCACACTTCTCCCACTTCCAAAAACAAGCCCCAGCATTTCCTTAGCAGTGATAGGTCCCAATGCCAATTCTTCTCCGCTAACTCTTCTTGGGAACTATGCTGGCCCTCCTTGTAAATACGTTACAATACTGCAAGGCTTTCGGCACTATGTTAAGAACGCGTTTTATCATCCCGGCTGTGATGGTGGACCCAAGTGTTCTTCCGCTCAAATAGACCAGGCAGTGGAAGTTGCAAAGAAAGTGGATTATGTGGTGCTGGTTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGCGATCGCGTTCATCTTGACTTGCCGGGCAAGCAACTTGAACTCATTAACGGCGTTGCTGAAGCTTCTAAGAAACCAGTTATTTTGGTCCTCCTTAGTGGAGGGCCTTTAGATATCACTTCAGCCAAGTATAACCACAAAATTGGAGGAATTCTCTGGGCTGGTTATCCAGGGGAACTTGGAGGCATTGCACTTGCTCAGATTATCTTTGGTGACCACAATCCAGGAGGGAGACTACCAACTACTTGGTACCCAAAAGATTACATCAAAGTACCAATGACAGACATGAGGATGCGAGCTGATCCTTCAACCGGCTATCCCGGGAGAACTTACCGGTTTTACAAGGGTCCAAAGGTGTATGAGTTTGGCTATGGACTAAGCTACTCAAAGTATTCCTATGAGTTTGTTTCTGTCACACATGACAAGCTTCACTTCAACCAATCATCCACTCATTTGATGGTTGAAAATTCCGAAACCATAAGTTACAAACTAGTTTCGGAGTTGGATGAACAAACCTGCCAAAGCATGTCACTCTCAGTCACAGTGAGAGTTCAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTATTGCTGTTTATTAGGCCTAAAAGACAGAAAAGTGGAAGTCCTGTGAAACAGTTGGTGGGTTTCGAGAGTGTTATGCTTGATGCAGGGGAAATGGCTCATGTTGAATTTGAGGTAAGCCCTTGTGAGCATCTTAGTAGAGCAAATGAGGCTGGTGCAATGATAATAGAAGAAGGGTCTCATATGTTGCTTGTGGATGATCTAGAGCATCCAATAGATATATATGTTTGA

Predicted protein sequences of Glyma06g11040

Limit To All Plant Sequences

>Glyma06g11040.1   sequence type=predicted peptide   gene model=Glyma06g11040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSILYLSLSLLTVTVQSSKPEAPFACDFSNPSSRSYPFCNPKLPIPQRTKDLLSRLTLDEKLSQLVNTAPPIPRLGIPAYQWWSEALHGVSGVGPGILFDNNSTISSATSFPQVILTAASFDSRLWYRIGHAIGIEARAIFNAGQANGLTFWAPNINIFRDPRWGRGQETAGEDPLLTSRYAVSFVRGLQGDSFKGAHLLASACCKHFTAYDLDNWKGVDRFVFDARVSLQDLADTYQPPFQSCVQQGRASGIMCAYNRVNGVPNCADYGLLTQTARNQWDFNGYITSDCGAVGFIHDRQRYAKSPEDVVADVLRAGMDLECGSYLTYHAKSAVLQKKLGMSEIDRALQNLFSIRMRLGLFDGNPTRLSFGLIGSNHVCSKEHQYLALEAARNGIVLLKNSPTLLPLPKTSPSISLAVIGPNANSSPLTLLGNYAGPPCKYVTILQGFRHYVKNAFYHPGCDGGPKCSSAQIDQAVEVAKKVDYVVLVMGLDQSEEREERDRVHLDLPGKQLELINGVAEASKKPVILVLLSGGPLDITSAKYNHKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPTTWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTHDKLHFNQSSTHLMVENSETISYKLVSELDEQTCQSMSLSVTVRVQNHGSMVGKHPVLLFIRPKRQKSGSPVKQLVGFESVMLDAGEMAHVEFEVSPCEHLSRANEAGAMIIEEGSHMLLVDDLEHPIDIYV*

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